Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04562 ATGGATAACCTTAATGATATATCTGGTGTTAATTTAAATGATGATGCATATGGATATGAGCTTGTTAGTTCTGATGATAGTGCAAGTGATGAGGCGATTGATGATAGTGATAGTGATAGTGATAGTGATAGTGATAGTGATGGTCATGGGGATTGTGATGTTGGCAATGGAAATGAGAGTGAAAATGATATTGCCACTAACCATGATGAACATAAGGGTAACAATAACAAAAACAGGGATCCCTTAATTGATGTAGATGGTGAAAAATTTAAAAGCATAGTAGATTTGACTGAAGAAGATATATTAGGACTTGATTTTGGTACTGAACAAGAAGCCTACGAATTTTATAGAACATATGGAAAATGTATAGGTTTTGCTGTAAGGAAAGATGATGTAAAGAGGGATGTTAGGGGGCAGATTAGAATGCGACAGTTTGTCTGCAATAAAGAAGGCGAACGGAACAAAAAACATTTAATGAGGGTTGATAGAAAAAGAGATCACAGGCCGTTGACTCGTACTTCTTGTACTGCTAAGATTCGTGTTCACTACAATATGAAGACAAACAGATGGAAAGTGGTGTCCTTCAAGCAGTCTCATAACCATGAATTATGCCCATCGGTATATAGGCACCTCATCACTGCAAATCGCTGCATTTTGGATGCTGACAAAGCCCAAATTGATAGCTTGCATGAACATGGGGTAAGAACCTGCCACATAATGGGTTATATGGTAGCTCAAAGAAGGGGATATGGTAATTTGTGTTTTTTGAGAAAGGATGTTTATAATTATCTTGATAGCAAAAATCGTAATCGGATTAAAGGTGGAGACGCTCGTGTAGCGTTAAGTTATCTTCAAGGAAAGTCTAATAGTGACCCCATGTTATATTGCAAGTACACAATTGATGAGAAAAATAGATTGAGGTCACTATTTTGGGCAGATGGTGCTTGCGTATCAGACTACCTGTGCTTTGGTGATGTTATTGCCTTTGACACTACCTATAAGAAAAACAGATACCAGCATCCTTTGGTAATTTTCTTAGGGTGTAATCATCATTCTCAAATCGTTATTTTTGGCTTTGCATTAGTGCCAGATGAGAGAATCGACACATACAAATGGGTCCTTCAAGCTTTTTCAGAAGCAATGTTCAACAAACAACCAAAATCAGTGGTTACTGATGGCGATGGAGCTATGAGAGAAGCCATTAAGCAAGTGTTTCCTAATGCATCACATAGATTGTGTGCTTGGCACTTGCAGAAAAATGCTTGTGAAAATGTTAAGAGACCACCTTTTTTGGAGGACTTTCAGAAAGCTGTGTACTCAAATTTTACCCCTCAACAATTTGAAGATTTTTGGGAGAAGATGGTTTTGAAACATGGGCTGGTAGGAAATAATTGGGTGAGTAAAAATATGAGAACAAAGCATTATGGGCCACTGCATATCTTCGAGATAAGTTTTTTGCTCGTATTAGGACTACATCTCAATGTGAGTCTATTAATGCATTTATAA 1506 0.3732 MDNLNDISGVNLNDDAYGYELVSSDDSASDEAIDDSDSDSDSDSDSDGHGDCDVGNGNESENDIATNHDEHKGNNNKNRDPLIDVDGEKFKSIVDLTEEDILGLDFGTEQEAYEFYRTYGKCIGFAVRKDDVKRDVRGQIRMRQFVCNKEGERNKKHLMRVDRKRDHRPLTRTSCTAKIRVHYNMKTNRWKVVSFKQSHNHELCPSVYRHLITANRCILDADKAQIDSLHEHGVRTCHIMGYMVAQRRGYGNLCFLRKDVYNYLDSKNRNRIKGGDARVALSYLQGKSNSDPMLYCKYTIDEKNRLRSLFWADGACVSDYLCFGDVIAFDTTYKKNRYQHPLVIFLGCNHHSQIVIFGFALVPDERIDTYKWVLQAFSEAMFNKQPKSVVTDGDGAMREAIKQVFPNASHRLCAWHLQKNACENVKRPPFLEDFQKAVYSNFTPQQFEDFWEKMVLKHGLVGNNWVSKNMRTKHYGPLHIFEISFLLVLGLHLNVSLLMHL. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04562 501 PANTHER OS01G0519700 PROTEIN 98 469 - -
Seca8g04562 501 MobiDBLite consensus disorder prediction 27 42 - -
Seca8g04562 501 Pfam FAR1 DNA-binding domain 114 204 IPR004330 -
Seca8g04562 501 MobiDBLite consensus disorder prediction 21 83 - -
Seca8g04562 501 MobiDBLite consensus disorder prediction 63 83 - -
Seca8g04562 501 Pfam MULE transposase domain 326 420 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04562 Seca-Chr8 129144623 129146128 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g04562 MULE 3.1e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04562 - - ccaj:109792835 550.821