Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04530 ATGGTGATTAGTATTTTTTCCAATTTTTCCAATAGCCGCAGCAGAAAATCGGAAAATGATAAGAGTGGAGCGGGAAAAGAAATTCGAAATTTCTCATCTGCTCTCTCCTCTCTCTCCATTCAACTTCAACTTTCAAATCAATCTGCGTCTCTCTCTCTGTCTCCTCTTTCTCTTTCAGAGCTCCACACTTGGCTGGAATCCGATTCAACAATGGGAGCCGTAGAGAACTACCACGTGATCGAGCTGGTTGGCGAGGGTTCCTTCGGGAAGGTCTACAAGGGCAGGCGCAAGCACACGGGACAGACTGTTGCGATGAAGTTCATAATGAAGCACGGGAAAACTGAGAAGGACATTCACAATTTAAGACAAGAAATCGAGATCTTAAGAAAGTTGAAGCATGAAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTCACAGAATTTGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGATAAGTGCCTTCCTGAAGAACAAGTTCAAGCAATTGCAAAGCAATTGGTAAGAGCTTTACATTATTTGCATTCCAACAGGATCATACATCGAGATATGAAGCCCCAGAATATTCTTATTGGTGCTGGATCTGTTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCAATGTCCACAAATACAGTTGTTTTGCGATCTATAAAAGGAACTCCTTTATACATGGCTCCAGAGCTTGTACGGGAACAACCTTACAACCACACTGTAGATTTATGGTCTCTTGGAGTTATACTGTACGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATTGTTAAGGATCCGGTTAAATATCCAGATCGCATGAGTCTAAATTTTAAAAGCTTTTTAAAGGGTTTGCTTAACAAGGCACCAGAAAGTCGACTAACTTGGCCTGCTCTTCTTGAACATCCATTTGTTAAAGAAACCTCTGATGAATTTGTCGCCAGGGAATTGCGTGAGATAAATGGTTCGCCCATGGATAGTGATACAGCACGGAGGGTTGAAGGAAAAACAATTCAAACTTCATCAGGTTCAGCCAGTTCTTGGAAAAATAATCACACAACAGGTTTGGAGGAGAATATTGCTTCACCACTTAAGACTGAAGCTCAGTTAAATGGTCCTAACATAAACAGAACCAATTCTTCAGTGCCTGATGAGTCCCCAGGATTTTCAAATCAAAATGCTGTAGGAGAGTCAGGCTGCCAAAGATTGGACAGACTTGAAAATAACTCTCGCACAGTCAAAGGTGCAAAAATAATTGGTCAAGATAATGAAGCGTTGGGACATATTCTGTTACCGCTGAAAAAATGGTCAAGAGGATCTCAAAATATTTGCAGTGATCAAGATGTTCATGATTCTAACCAGTCACTGAGGATTCTCTCAAACCTAGTTGCAGCCGGTGCCTTCAGTTCTAGTGGACGAATAGATGAACTAATAAGCGAACTCCTTGTGTTTACTAGATCTATTATAGCCATGAAATCTGCTGAAGTTATTGACTTGATGACAAAGAGTTTCTCCATCACTAAAATTTTGCTAGATAATGCTTGGAGTTGCACTTCGAGCTCTTATTTAAATCACTGGGTTGAATTCATTGAAATCTATTCTCAGGTTGTAACTTCGATTAATGATACATCGGGAAGAGTTCTGTTTGAGTCTAGTGCCTGCATTACAGTCATACTGTCTAAAGTTGCTCAGGTGCTTAAATCATCTCCTCAAAATTCAGGCCCAGAGTCACTGAACGAAACAGCTAAGAGAATTATTGACCATGCGAAAACATCTGGTTTAGTGGACCATTTATGTCTGTGCTTAGCCACTTCAGGCTCGAGTCTTATTTCAGGCTCTTCCACTATGCTGCGGGCTGCTTCTGAAGCATGCAGAGCTCTCTGGTCTTTAATTAATGCACTGGATATCCTTTTTATGAAAAAAAGTGCCATTTTGTTTCCCATAAATGCTTTGCGGAGTCATTCTTTGCAGAGGTTGGAAATTGTGGATCGTGAGCAAGATCCCTTGTTTGAAGCAGAATCAACAAAAATAGTTGATGCAATGACAAGAGCATTCCTGAGATCCAAAGCTGTTCAGGTTGCTGTTTACTATTGTTTTCACCAACGTCTTGAGTCTGCAATGAATTGTGGTCTTCAGCTTTTGTCAAGGTGCTGCCTCCATAGTGGAATTGTTCCTGCTCTCCTTTGTGGTCTGCCCAGTTCCCTTCCTGTGACTACTGTTGTCAGTGGTGGTGGTGATGGGACTATTGTTTCAGAAATTTTCTCTGTTTTGTCGTTATGCAGTTCCTCTCTTAACAAAGATGCACATAGTGTAGAACCAAGTAGCGTTAAATGCAAATTAACAAATCCATCTGCTTTGGTCCGTCATTCATGTCTCATTCTTGCAATAATTGCACAATGTTTAAAGTCAACTGGAAGAAACTCAGCAATTTTTATGCTCACTACCTCACCAAAGAAGCAGCTTGGTCGACTTTCAGTGCTTGCTCATCATATTTCTTCTGAAGATAAAACAAATGCCTCTTCCCAACATCAAAGTGCACCAGCCATGTTGGCTTTGGCATCCATTCTATCCCTTGAATCTGGGGCTTTGGTTGAGTCTCCAATATCTGAAATTGCTATGCCCTTAATTCCTCGAACTTCTACGCTAAGTGACCATCTTAAGTTTTCATCTGGAAACGAGAACGAATTGGACCCTGGCAACTTTTGTGGGAAGCTTTCGCATTGGCAAGGGGTCAGAGATGGGTGTGTTGGTCTTTTAGATTCTAGACTCAAGTGGGGAGGACCGTTAGCTGTTCAGCAGTTGTGTGCAAGTGGCATACCTCTTCTTCTTATTGGCTTATTAAGCAATGAGTTTCTAAATGCTTCTCAAGCAAATGAGCGCCTAAACAATAGTGTTGGATTATCACCTATTGGTGTTGTATGGACAATTTCATCATTATGTCATTGTCTTTCTGGTGGTGCTTTGACTTTTCGTCAGATTTTGATTAGGAATGAACATATTAAGGTCATCTCCAACTTAATATGTGATGTTCATCTCAAGTTGATAAAATGCTGGATTGGACCTGGTGGAGGGAGAACAGGAGTCAGAGATCTAATAAATGCAGTAATAGATCTGTTAGCATTTCCTTTTGTTGCTCTACAAAATGCACCTGGCTTGCCATCAGCCACTGCTTCTGTCAGCAGTGGGTTTCTTCTTAACGTTGGTTCCCCTGGTCAGAGAGTATGCATGGAAGACAAGGATGTAGTTAAGGCAATAGAAGAAGACATGGGCAAATACATTAAGATCCTTGTGGAGGTGGGTGTGCCTGGTATTATCCTTCGATGCCTAGATCATATGGAGTTGAATGATTTGGGCAGGCCTGTAGCCTTTCTCGCTAAAATGGTATGCCACCGACCTTTAGCAGTCCAACTTGTCAGTAAAGGTCTTCTGGATCCAAATAGGATGAGAAGGTTGTTTGACTATTCGGGCCCAAAAGAGGTCACCCTGGATGCCCTTATGATAATATCTGATCTTGCTCGCATGGACAAGGGATTCTATGAGTACATTAAAGGTGCTTCTATTTTGGAGTTCTTAAAAGATTTTCTTTCTCATGAGGATCCCAATATGCGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGCCGCCATAGCGCCTACTTTTATAGTTCACTTGCAAGACATCAAATTGTTAGTATTCTTATCGATCGGTGCTCTGATCCGGACAAACGAACACGGAAATTTGCTTGTTTTGCTATTGGAAATGCGGCCTACCACAATGACGTGTTGTATGAAGAGCTGAGGAGATCGATTCCTCAATTGGCAAATTTGTTGCAAATGGCAGAGGAGGACAAGACTAAGGCAAATGCAGCAGGTGCACTTAGCAATCTGGTTCGCAACTCTGACAAGCTTTGTGAAGACATTGTGTCAAAAGGAGCGATTCAGTCTCTCCTGAAGTTAATTTCCGATTGTGCTGTATTAGCACTAAATCCCAGCAGAAATGATTCGACAAACGAATCTCCTTTAAAGATAGCTCTCTTTTCCTTAGCAAAGATGTGTGCACACCCTCTCTGCAGACAGTTCATCCGTTCATCACCTTTGTTCCCTGTGATTGGGAGGCTTCAGCAGTCTCCAGAATCATCCATTGCCAAATATGCCTCCGTGATTATTAGCAAAGTTGCTGAACCTTGA 4254 0.4156 MVISIFSNFSNSRSRKSENDKSGAGKEIRNFSSALSSLSIQLQLSNQSASLSLSPLSLSELHTWLESDSTMGAVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDRMSLNFKSFLKGLLNKAPESRLTWPALLEHPFVKETSDEFVARELREINGSPMDSDTARRVEGKTIQTSSGSASSWKNNHTTGLEENIASPLKTEAQLNGPNINRTNSSVPDESPGFSNQNAVGESGCQRLDRLENNSRTVKGAKIIGQDNEALGHILLPLKKWSRGSQNICSDQDVHDSNQSLRILSNLVAAGAFSSSGRIDELISELLVFTRSIIAMKSAEVIDLMTKSFSITKILLDNAWSCTSSSYLNHWVEFIEIYSQVVTSINDTSGRVLFESSACITVILSKVAQVLKSSPQNSGPESLNETAKRIIDHAKTSGLVDHLCLCLATSGSSLISGSSTMLRAASEACRALWSLINALDILFMKKSAILFPINALRSHSLQRLEIVDREQDPLFEAESTKIVDAMTRAFLRSKAVQVAVYYCFHQRLESAMNCGLQLLSRCCLHSGIVPALLCGLPSSLPVTTVVSGGGDGTIVSEIFSVLSLCSSSLNKDAHSVEPSSVKCKLTNPSALVRHSCLILAIIAQCLKSTGRNSAIFMLTTSPKKQLGRLSVLAHHISSEDKTNASSQHQSAPAMLALASILSLESGALVESPISEIAMPLIPRTSTLSDHLKFSSGNENELDPGNFCGKLSHWQGVRDGCVGLLDSRLKWGGPLAVQQLCASGIPLLLIGLLSNEFLNASQANERLNNSVGLSPIGVVWTISSLCHCLSGGALTFRQILIRNEHIKVISNLICDVHLKLIKCWIGPGGGRTGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNVGSPGQRVCMEDKDVVKAIEEDMGKYIKILVEVGVPGIILRCLDHMELNDLGRPVAFLAKMVCHRPLAVQLVSKGLLDPNRMRRLFDYSGPKEVTLDALMIISDLARMDKGFYEYIKGASILEFLKDFLSHEDPNMRAKACSALGNMCRHSAYFYSSLARHQIVSILIDRCSDPDKRTRKFACFAIGNAAYHNDVLYEELRRSIPQLANLLQMAEEDKTKANAAGALSNLVRNSDKLCEDIVSKGAIQSLLKLISDCAVLALNPSRNDSTNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYASVIISKVAEP. 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04530 1417 ProSiteProfiles Protein kinase domain profile. 77 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04530 1417 Coils Coil 1285 1305 - -
Seca8g04530 1417 Gene3D Transferase(Phosphotransferase) domain 1 68 399 - -
Seca8g04530 1417 SUPERFAMILY ARM repeat 1110 1414 IPR016024 -
Seca8g04530 1417 FunFam Serine/threonine-protein kinase 36 74 391 - -
Seca8g04530 1417 Pfam Protein kinase domain 77 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04530 1417 FunFam Serine/threonine-protein kinase TIO 1144 1413 - -
Seca8g04530 1417 ProSitePatterns Protein kinases ATP-binding region signature. 83 110 IPR017441 GO:0005524
Seca8g04530 1417 FunFam Aurora kinase A 70 159 - -
Seca8g04530 1417 Gene3D - 1143 1414 IPR011989 -
Seca8g04530 1417 PANTHER PROTEIN KINASE RELATED 74 1414 - -
Seca8g04530 1417 Coils Coil 111 131 - -
Seca8g04530 1417 CDD STKc_STK36 75 327 - -
Seca8g04530 1417 SMART serkin_6 77 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04530 1417 SMART arm_5 1280 1320 IPR000225 GO:0005515
Seca8g04530 1417 SMART arm_5 1197 1237 IPR000225 GO:0005515
Seca8g04530 1417 SMART arm_5 603 654 IPR000225 GO:0005515
Seca8g04530 1417 SMART arm_5 1321 1375 IPR000225 GO:0005515
Seca8g04530 1417 SUPERFAMILY Protein kinase-like (PK-like) 70 336 IPR011009 -
Seca8g04530 1417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Seca8g04530 1417 MobiDBLite consensus disorder prediction 391 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04530 Seca-Chr8 128695643 128712708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04530 66 316 AGC Kinase Gene Family AT3G08720 38.340 5.02e-46 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Seca8g04530 Pkinase 4.9e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04530 K06228 - gmx:100792102 2294.23