Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04525 ATGCAAAATTCAATTTCAGATGATATCAGTATCAATGATTACTTTCTACTACCACAAGAAGTTCCCATCATCAACAACCTTCAAATTCCTCAACCCTCTTTCTCCTCCAAGCCTCCAAGATCCTCAAATCTAAGCAACCGCAAGCCTTCCTTGAAGAACATCACAATCCCTTCCATAACCACAGAAATTGAAACAACCACTTATAACCATCAAAATCAAAATCAAAGTACTTCTTCTTCAGATAGTGGTGTTAATGACACCAAAGAGGACAAACACTACAGAGGAGTTAGAAGAAGACCATGGGGAAAATTTGCTGCAGAGATACGTGACCCCAATAGAAAAGGCTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAAGCTTATGATAGAGCTGCTTTCAAGATGAGAGGAAGCAAGGCCATATTGAACTTCCCTCTAGAAGTTGGTGATGATTCTGATGAATCAGTTTCTAGCTGCATCAAGGTTGGTGAGAAAAGGAGAAGAGATGAAAAGAGTGAAGTTAAAAATAATAATAGCAATAAGAAAGTGAAGCAAGAAGAGTGTTGTTCTCCAAAAGGGGTTTCTGCAGCAACTGCTGGGCCTTTAACTCCTTCATGTTGGAAAGGGTTTTGGGACACTGATGTTATGGGCACTATCTTTAGTGTACCTCCTTTGTCACCATTATCTCCACTTATGGTTGTTTGA 720 0.4028 MQNSISDDISINDYFLLPQEVPIINNLQIPQPSFSSKPPRSSNLSNRKPSLKNITIPSITTEIETTTYNHQNQNQSTSSSDSGVNDTKEDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSKAILNFPLEVGDDSDESVSSCIKVGEKRRRDEKSEVKNNNSNKKVKQEECCSPKGVSAATAGPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04525 239 FunFam Ethylene-responsive transcription factor 2 91 152 - -
Seca8g04525 239 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Seca8g04525 239 PRINTS Ethylene responsive element binding protein signature 132 152 IPR001471 GO:0003700|GO:0006355
Seca8g04525 239 Gene3D AP2/ERF domain 91 152 IPR036955 GO:0003700|GO:0006355
Seca8g04525 239 CDD AP2 91 150 IPR001471 GO:0003700|GO:0006355
Seca8g04525 239 MobiDBLite consensus disorder prediction 169 190 - -
Seca8g04525 239 SUPERFAMILY DNA-binding domain 92 152 IPR016177 GO:0003677
Seca8g04525 239 MobiDBLite consensus disorder prediction 67 83 - -
Seca8g04525 239 MobiDBLite consensus disorder prediction 67 98 - -
Seca8g04525 239 PANTHER DNA-BINDING DOMAIN 55 186 IPR044808 GO:0003700|GO:0009873
Seca8g04525 239 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Seca8g04525 239 SMART rav1_2 92 156 IPR001471 GO:0003700|GO:0006355
Seca8g04525 239 ProSiteProfiles AP2/ERF domain profile. 92 150 IPR001471 GO:0003700|GO:0006355
Seca8g04525 239 MobiDBLite consensus disorder prediction 30 55 - -
Seca8g04525 239 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04525 Seca-Chr8 128541923 128542720 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04525 41 236 AP2-EREBP Transcription Factor Family AT5G51190 50.000 9.96e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g04525 AP2 2.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04525 K09286 - gmx:100795866 255.373