Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04522 ATGACAACAGCAGAAGAAGAAACTTCAAACTTAGATCTGATATGCCAATATCTCTTAGAGGAAACCTCAAACTCTTTCCTCACCAATCTCTATCCTGTAAAACTTGAAGACCCTTCACCAGATTTTGATTTCAGTTCATATATTTCAGCCAACAGCAGCTTCTGCTCTTTACTTGAAGGCTGTGATTGGGTGGATATGGAGTTTGTTGATCACAGTTCTCCAAAGTTCCTGAATTCCACAGAAACTAGCCCCTCAAAGGATACCCAGAAATGCAATTCCCCTGAAGCAATTGTAGTGTCAGAGAAGAGAAAGAAAACAGCAGAGTGTGATGAGGCAAGGCGTTACAGAGGAGTGAGGAGAAGGCCATGGGGAAAGTTTGCTGCTGAGATACGTGACCCAACAAGGAAAGGGACCAGAGTTTGGTTAGGTACATTTGACACTGAAATTGATGCTGCAAAGGCTTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAAGCCATATTGAATTTCCCTTTGGAGGCTGGTGAGTCTGAACCAAAGCCAAATAGTTGTAGCAGGAAAAGGAGAAGAGAGAGCACATTGATCAAGCTACCACAAGTTCAAGTTCATCATGGAGAGTCCTGA 627 0.4306 MTTAEEETSNLDLICQYLLEETSNSFLTNLYPVKLEDPSPDFDFSSYISANSSFCSLLEGCDWVDMEFVDHSSPKFLNSTETSPSKDTQKCNSPEAIVVSEKRKKTAECDEARRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTEIDAAKAYDCAAFKMRGQKAILNFPLEAGESEPKPNSCSRKRRRESTLIKLPQVQVHHGES. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04522 208 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Seca8g04522 208 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Seca8g04522 208 FunFam Ethylene-responsive transcription factor 2 113 174 - -
Seca8g04522 208 Gene3D AP2/ERF domain 113 174 IPR036955 GO:0003700|GO:0006355
Seca8g04522 208 PRINTS Ethylene responsive element binding protein signature 154 174 IPR001471 GO:0003700|GO:0006355
Seca8g04522 208 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Seca8g04522 208 MobiDBLite consensus disorder prediction 173 208 - -
Seca8g04522 208 MobiDBLite consensus disorder prediction 181 195 - -
Seca8g04522 208 Pfam AP2 domain 114 164 IPR001471 GO:0003700|GO:0006355
Seca8g04522 208 SUPERFAMILY DNA-binding domain 114 174 IPR016177 GO:0003677
Seca8g04522 208 CDD AP2 122 172 IPR001471 GO:0003700|GO:0006355
Seca8g04522 208 PANTHER DNA-BINDING DOMAIN 86 184 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04522 Seca-Chr8 128476608 128477234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04522 111 202 AP2-EREBP Transcription Factor Family AT5G07580 65.217 8.16e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca8g04522 AP2 7.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04522 - - ccaj:109813158 278.1