Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04508 ATGAACAGTGCCTCCGATTCTGATGACAACCCTTCGGGGGAGCAACAAGGATATGCATATTATTCAGTTGGGTTATCTCTTGGGATTCTCCTAGTGATCACTGTAATAACTCTCATTTCCTATTACTGTAGCCGTAGAAGCTTGCAAAACAGGCAAGTAAGTGCCACACCCAACACCAGCTTGGAGCTAGATTCTGCCTTAACTATTCAGATTCATGAGGAACAAGAAGCCATTGTGAACAGTTATCCAGTGCTATTGTATTCCCAAGCCAAGCAGCATAATAAGCCTGATTCGGCAACAATAACATCTTGCTGCTCAATTTGCTTGGCAGATTACAAGGACACAGACTTGATGAAGCTTCTACCTGATTGTGGTCACTTGTTTCATAGAGATTGCATCGATAGGTGGTTCAATGTAAACTTGACATGTCCTGTGTGTCGAACCTCACCACTCCCAACTCCTCTTTCAACTCCTCTTGCTGAAGTTACTCCCTTGGCAACAAGACATGATTGA 513 0.4347 MNSASDSDDNPSGEQQGYAYYSVGLSLGILLVITVITLISYYCSRRSLQNRQVSATPNTSLELDSALTIQIHEEQEAIVNSYPVLLYSQAKQHNKPDSATITSCCSICLADYKDTDLMKLLPDCGHLFHRDCIDRWFNVNLTCPVCRTSPLPTPLSTPLAEVTPLATRHD. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04508 170 SUPERFAMILY RING/U-box 78 152 - -
Seca8g04508 170 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Seca8g04508 170 SMART ring_2 105 146 IPR001841 -
Seca8g04508 170 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 161 IPR045899 -
Seca8g04508 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 151 IPR013083 -
Seca8g04508 170 Pfam Ring finger domain 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04508 Seca-Chr8 128180538 128181050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04508 14 168 C3H Transcription Factor Family AT5G06490 38.286 3.42e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04508 - - gmx:102670414 213.386