Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04470 ATGGACATGGACATGGACATTCCCCTCCCCGAAGAGCTCGAATTGCTCGAATCAAATTATAATCTTCACGAACAAGAAGATCATAATCAGGACTATTACTACCCTCCAGACTTCGACTCAAACGAACCCCAACCCCAACCCCAAAACGGACCCGAATCCGAAGAACCGCCGCCAGATCTTGCGCTTCCTTCCGAACCCCAAACCAACAGCCTCAAGCGCTCACGTTCAGGTTCGGATTTGGGTTCAGAGTCTTCCGATGAGGAGAAAAGAGCGAAGGTTAGGGTTCAGGATTCCCCCTCCGACGAGGACTGGCTTCGGTACTCTCCTCCTCCTCCTCCTCCTCCTCCCGTTCCGGCGGAAGAAGCGAGGTTCGTGAAGGAGAAGACGTTGTCGCGGTACGCGTCGGAGATCGACGGCGAGTGTATGCCGGTCACCGCGCCCAACGGGAACAGGGTTTACGCCAAGCTGAATCGGTTCCGAGGAGAAGAGCGAGTGACGAAGCTGGATTGCATAGGATATTCTTCTGATCTTGGTTTAGAACCGATAAATATTCTATTTGAAAAGTTGGAGCAAGAGACTTTTGCTAAGACTTTGCAAGCTAGTTCTGAATGCCAAAGTGTTCTTGATGATCCTGAAACACGAACAATTGTCCATGAACAACTTTGGGTGGATAAATATGCTCCCAAGTCATTTACTGAGCTTCTTAGTGATGAACAGACAAATCGTGAGGTACTCTTGTGGTTGAAACAATGGGATTCTACTGTGTTTGGATCTGAAATTCGAAGTACATCAGAAGATGTTTTGTCTGCTTTGAAACGACATTCTTCTATTGCCCAAAATCAGAAACCTTTGGATTCAAAGTTTCCAAGGACAAACAAAGGTTCCAAATGGAGTAGTAGGAGGTATATGGATTCTAGAAGTAAGGATGAGAGTGGTAATTCAAAGAGTATTCAGGATATCTGGAACACGAAGTCAAGGAATATTGGTCCACCAGAACAGAAGATCCTTCTTCTCTGTGGACCACCAGGTCTTGGAAAAACAACACTTGCACATGTAGCTGCTAGGCATTGCGGATATCATGTGGTGGAGGTTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCAAAAATCCTTGATGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAGGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCTCTTGGTGATGGCAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCTGATGCAGGAAAGCAAAGTTTGGGCAAAGGACAACCGGAAAGGAAATCTTCAAAGAAGGGTCGGAAAACAGCGTCACTGTCAAGACCTGTGATTTGCATATGTAATGACCTATATGCACCAGCCTTAAGACCATTACGTCAGGTAGCCAAGGTTCATATATTTGTTCAACCAACAGTTAGTCGTGTGGTAAGCAGATTGAAATATATATGTAACAAGGAGGGGATGAAAGCCACTGCCATTGCACTCACTGCTCTAGCAGAATATACAGCTCTAATAGTAATATGA 1563 0.4536 MDMDMDIPLPEELELLESNYNLHEQEDHNQDYYYPPDFDSNEPQPQPQNGPESEEPPPDLALPSEPQTNSLKRSRSGSDLGSESSDEEKRAKVRVQDSPSDEDWLRYSPPPPPPPPVPAEEARFVKEKTLSRYASEIDGECMPVTAPNGNRVYAKLNRFRGEERVTKLDCIGYSSDLGLEPINILFEKLEQETFAKTLQASSECQSVLDDPETRTIVHEQLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSTVFGSEIRSTSEDVLSALKRHSSIAQNQKPLDSKFPRTNKGSKWSSRRYMDSRSKDESGNSKSIQDIWNTKSRNIGPPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISAERKPDAGKQSLGKGQPERKSSKKGRKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVSRVVSRLKYICNKEGMKATAIALTALAEYTALIVI. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04470 520 CDD AAA 331 425 - -
Seca8g04470 520 Gene3D - 219 481 IPR027417 -
Seca8g04470 520 MobiDBLite consensus disorder prediction 17 33 - -
Seca8g04470 520 MobiDBLite consensus disorder prediction 49 63 - -
Seca8g04470 520 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 3 515 - -
Seca8g04470 520 MobiDBLite consensus disorder prediction 279 296 - -
Seca8g04470 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 515 IPR027417 -
Seca8g04470 520 Gene3D - 483 516 - -
Seca8g04470 520 MobiDBLite consensus disorder prediction 279 316 - -
Seca8g04470 520 MobiDBLite consensus disorder prediction 1 120 - -
Seca8g04470 520 MobiDBLite consensus disorder prediction 79 101 - -
Seca8g04470 520 SMART AAA_5 332 486 IPR003593 GO:0016887
Seca8g04470 520 MobiDBLite consensus disorder prediction 105 120 - -
Seca8g04470 520 MobiDBLite consensus disorder prediction 426 448 - -
Seca8g04470 520 Pfam ATPase family associated with various cellular activities (AAA) 336 462 IPR003959 GO:0005524|GO:0016887
Seca8g04470 520 MobiDBLite consensus disorder prediction 297 313 - -
Seca8g04470 520 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04470 Seca-Chr8 127248189 127260925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04470 333 513 Core DNA Replication Machinery Family AT5G22010 29.592 7.86e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04470 K11269 - gmx:100785041 744.962