Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04462 ATGCCTTACGTCGACTGCTGCAACGTTTGCACACATTTAACGTTGGGTACATGTCCTTGTAGTGACTCTGCAATAGCAGAGACCAAACCCAATGTTTGCGTGGATTTATCACTTGGTCTGTGTCTTTGTACCACGACAGAATCTGGTTCTTCCAGCAAGAAAGGGAAACATGATGATGAAGCACACATTGGTTCAACAAAGAAGGCGTGCAGCAATGAAGTGGATAGAAGGTGGGGTTACTCAACAGAGTTGATGCTGTATGATGACCCTTGGAAGATCAAGAAAGTCCTCAAAGAGAGTGATCTTGGCAACATGAGTAGACTCTTGCTGGGAAGAGATTTGGCACAAGAATTGGTGCTGCCTGTGTTGGGTGCTAATACTGATCTTGACAATGGAACTCAAGTCTCGATTTGGGATGTTGACACCAACTCCATGCACTCTCTGCTTTTCAAGAAATGGGTTTCTTCAAGAAGCTATGTTTTCATTGGTAGCTGGGTCCAAGATTTTGTCATTAGAAGAGCCTTAAAGAAAGGAGATGAGATTGGCCTTCACTAG 555 0.4396 MPYVDCCNVCTHLTLGTCPCSDSAIAETKPNVCVDLSLGLCLCTTTESGSSSKKGKHDDEAHIGSTKKACSNEVDRRWGYSTELMLYDDPWKIKKVLKESDLGNMSRLLLGRDLAQELVLPVLGANTDLDNGTQVSIWDVDTNSMHSLLFKKWVSSRSYVFIGSWVQDFVIRRALKKGDEIGLH. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04462 184 SUPERFAMILY DNA-binding pseudobarrel domain 89 182 IPR015300 -
Seca8g04462 184 Gene3D - 90 184 IPR015300 -
Seca8g04462 184 CDD B3_DNA 91 184 IPR003340 GO:0003677
Seca8g04462 184 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 47 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04462 Seca-Chr8 127167723 127168277 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04462 75 184 B3 DNA Binding Superfamily AT3G24650 30.909 1.12e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04462 - - aprc:113850604 198.749