Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04460 ATGCCTTTCGTTGACTGCTCCAACGTTTGCACACATTTAACGTTGGGTACATCATGTCCTTGCAGTGACTCTGCAATAGCAGAGACCAAACCCAATGTTTGCGTGGATTTATCACTTGGTGTGTGTCTTTGTACCACGACAGAATCTGGTTCTTCCAGCAAGAAAAGGAAACATGACGACAAAGCACACATTGGTTCAAGAAAGAAGGCGTGCAGCAATGAAGTGGACAGAAGTTGGGGTTACTCAACAGAGTTGATGCTCTGTGATGACCCTTGGAAGATCAAGAAAGTTCTCAAAGAGAGTGATGTTGGCAACATGAGCAGACTCTTGCTCGGTAGAGATTTGGCACAAGAATTGGTGCTGCCTGTGTTGGGTGCTGATGCTGATCTTAACAATGGAACTCAAGTCTCGATTTGGGACGTCGACACCAACTCCATGCACTCTCTGCTTTTCAAGAAATGGGTTTCTTCAAGAAGCTATGTTTTCATTGGCAGCTGGGTCCAAGATTTTGTTATTAGAAGAGCCTTAAAGAAAGGAGATGAGATTGGCCTTCACTGGGATCCATACAACAGTCACTTCAATTTCTCAGTTCTTAAGGCCATTTAG 606 0.4422 MPFVDCSNVCTHLTLGTSCPCSDSAIAETKPNVCVDLSLGVCLCTTTESGSSSKKRKHDDKAHIGSRKKACSNEVDRSWGYSTELMLCDDPWKIKKVLKESDVGNMSRLLLGRDLAQELVLPVLGADADLNNGTQVSIWDVDTNSMHSLLFKKWVSSRSYVFIGSWVQDFVIRRALKKGDEIGLHWDPYNSHFNFSVLKAI. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04460 201 SUPERFAMILY DNA-binding pseudobarrel domain 90 197 IPR015300 -
Seca8g04460 201 CDD B3_DNA 92 199 IPR003340 GO:0003677
Seca8g04460 201 Gene3D - 91 197 IPR015300 -
Seca8g04460 201 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 53 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04460 Seca-Chr8 127072537 127073142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04460 76 187 B3 DNA Binding Superfamily AT3G24650 31.250 2.32e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04460 - - aprc:113850604 232.646