Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04454 ATGCCTTTCGTTGACTGCTCCAACGTTTGCACACATTTAACGTTGGGTACATGTCCTTGTAGTGACTCTGCAATAGCAGAGACCAAACCCAATGTTTGCGTGGATTTATCACTTGGTCTGTGTCTTTGTACCACGACAGAATCTGGTTCTTCCAGCAAGAAAGGGAAACATGATGATGAAGCACACATTGGTTCAACAAAGAAGGCGTGCAGCAATGAAGTGGACAGAAGGTGGGGTTACTCAACAGAGTTGATGTTGTATGATGACCCTTGGAAGATCAAGAAAATCCTCAAAGAAAGCGATCTTGGCAACATGAGCAGACTCTTGCTGGGAAGAGATTTGGCACAAGAATTGGTGCTGCCTGTGTTGGGTGCTGATACTGATCTTGATAATGGAACTCAAGTCTCGATTTGGGATGTTGACACCAACTCCGTGCATTCCCTCCTTTTCAAGAGATGGGTTTCTTCAAGAAGCTATGTTTTCATTGGCAGCTGGGTCCAAGATTTTGTTATCAGAAGAGCCTTAAAGAAAGGAGATGAGATTGGCCTTCACTGGGATCCATACAACAATCACTTCAATTTCTCTATTCTTAAGGCCATTTAA 603 0.4345 MPFVDCSNVCTHLTLGTCPCSDSAIAETKPNVCVDLSLGLCLCTTTESGSSSKKGKHDDEAHIGSTKKACSNEVDRRWGYSTELMLYDDPWKIKKILKESDLGNMSRLLLGRDLAQELVLPVLGADTDLDNGTQVSIWDVDTNSVHSLLFKRWVSSRSYVFIGSWVQDFVIRRALKKGDEIGLHWDPYNNHFNFSILKAI. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04454 200 Gene3D - 90 197 IPR015300 -
Seca8g04454 200 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 47 198 - -
Seca8g04454 200 CDD B3_DNA 91 198 IPR003340 GO:0003677
Seca8g04454 200 SUPERFAMILY DNA-binding pseudobarrel domain 89 195 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04454 Seca-Chr8 127010635 127011237 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04454 75 186 B3 DNA Binding Superfamily AT3G24650 31.250 5.17e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04454 - - aprc:113850604 225.328