Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04444 ATGTCTATGCTGTGTTTTGAAGTTCGTAGAGGGTTTTGTTTCGTCAAATCGTGTGGGTTATTTCACATGAGTCTTGGTGCTCTGCTGAACGAGATTGCTCGTCTCAGAAGGAGCCACTGGCAATCAAAGAGAAAGGTTAGAGAGCCCAAGGAGGAAAATGTCACCCTTGGTCCTGCGGTAAAAGATGGTGAGCATGTTTTTGGCGTGGCTCGCATTTTTGCATCTTTTAATGACACCTTCATTCATGTCACTGATTTGTCTGGAAGGGAAACTCTTGTCCGCATTACTGGTGGAATGAAGGTTAAAGCTGACAGAGATGAGTCATCTCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCTGCCAGATGCAAGGAGTTGGGCATAACTGCTCTTCATATCAAGCTCCGTGCAACAGGAGGAAACAAGACAAAAACACCTGGTCCTGGTGCTCAGTCTGCTCTCCGTGCCTTGGCTCGGTCTGGGATGAAAATTGGCCGCATAGAGGATGTGACCCCAATTCCTTCAGATAGCACACGTAGAAAGAGTGGTAGAAGGGGTAGAAGGCTTTGA 573 0.4712 MSMLCFEVRRGFCFVKSCGLFHMSLGALLNEIARLRRSHWQSKRKVREPKEENVTLGPAVKDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04444 190 Pfam Ribosomal protein S11 68 186 IPR001971 GO:0003735|GO:0005840|GO:0006412
Seca8g04444 190 MobiDBLite consensus disorder prediction 170 190 - -
Seca8g04444 190 FunFam 40S ribosomal protein S14 41 190 - -
Seca8g04444 190 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 43 183 IPR001971 GO:0003735|GO:0005840|GO:0006412
Seca8g04444 190 SUPERFAMILY Translational machinery components 63 188 - -
Seca8g04444 190 Hamap 30S ribosomal protein S11 [rpsK]. 36 187 IPR001971 GO:0003735|GO:0005840|GO:0006412
Seca8g04444 190 Gene3D Ribosomal protein S11 41 190 IPR036967 GO:0003735|GO:0005840|GO:0006412
Seca8g04444 190 ProSitePatterns Ribosomal protein S11 signature. 155 177 IPR018102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04444 Seca-Chr8 126855635 126858202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04444 42 179 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 90.580 8.58e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04444 K02955 - gmx:100499665 263.848