Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04436 ATGGAGGTTGCTTTTTCTGCTTCTGCTAAATGGGTCCTCAATGTCTGCTTCTTGTTGCTTCTTGTGTCACTCATTGGAGAAGAAGCCATGGCCACACCACAGATCTCTCTGCTCAGGAATGTTGAAGTTGAATCACACAGGTTGCAGAGCTTCAACGACTCATCAATGGCGGCAAGGGCAAAAGAGGCTGAGAAATTGAATGAGGGTGCTGCGGTGGCTAACCCAGAAGAGGTGGCTTCTATGGTTGAAATGAACATCCAGAATAGCACTGAAAGAAGAAAGCTTGGATTTTTCTCCTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGAGCCCAATTGGCAACGTAACAGGAAGCGCCTTGCAGATTGTGGTATTGGTTTTGGTAGAAATGCCATTGGTGGCCGTGATGGAAAGTTCTATGTTGTTACTGACCCAAGAGATGATGACCCTGTTAACCCCAAACCTGGAACTTTGCGCCATGCTGTTATCCAAGACAGGCCCCTATGGATTGTGTTCAAGAGGGACATGGTTATACAGTTGAAGCAAGAGCTCATTGTGAATAGCTTCAAGACCATTGATGGAAGAGGAGCTAATGTCCATATTGCTAATGGAGGGTGCATCACAATCCAGTATGTTACCAATGTCATCATTCATGGCCTTCACATCCATGACTGCAAACCCACTGGAAATGCCATGGTGAGGAGCTCCCCAACACACTTTGGATGGAGAACAATGGCTGATGGAGATGCTGTCTCCATATTTGGCTCAAGTCATATTTGGGTTGATCACAATTCCTTGTCCCATTGTGCTGATGGTCTTGTGGATGCTGTCATGGGCTCAACAGCTATAACAATTTCTAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGAGACAAACAAATGCAAGTGACCATTGCATATAACCATTTTGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATTAACAGCCAGGGAAATAGATACAATGCTCCAGTTAACCCTTTTGCCAAGGAGGTAACTAAGAGAGTTGAAACAGCTGAAAGTCAGTGGAAAGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTGCTGAATGGTGCTTACTTCACCCCATCAGGAGCTGGAGCCTCAGCCAGTTATGCAAGGGCATCTAGCTTAGGAGCTAAATCATCTTCTATGGTTGGTGCCATGACTTCAAATGCTGGTGCACTTGGTTGCCGCAGGGGGCGTCAATGCTAG 1359 0.4643 MEVAFSASAKWVLNVCFLLLLVSLIGEEAMATPQISLLRNVEVESHRLQSFNDSSMAARAKEAEKLNEGAAVANPEEVASMVEMNIQNSTERRKLGFFSCGTGNPIDDCWRCEPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGAMTSNAGALGCRRGRQC. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04436 452 Pfam Pectate lyase 184 367 IPR002022 -
Seca8g04436 452 FunFam Pectate lyase 103 445 - -
Seca8g04436 452 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Seca8g04436 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Seca8g04436 452 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Seca8g04436 452 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Seca8g04436 452 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Seca8g04436 452 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Seca8g04436 452 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Seca8g04436 452 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Seca8g04436 452 SUPERFAMILY Pectin lyase-like 80 446 IPR011050 -
Seca8g04436 452 Gene3D - 103 445 IPR012334 -
Seca8g04436 452 PANTHER PECTATE LYASE 18-RELATED 72 450 IPR045032 GO:0030570
Seca8g04436 452 SMART amb_all 178 375 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04436 Seca-Chr8 126680587 126686105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04436 34 452 Polysaccharide Lyase AT4G13710 80.189 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04436 K01728 - gmx:100808253 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04436 8 126680587 126686105 Seca8g04436 8 126680587 126686105 ECH