Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04430 ATGTCTGGGAACATCAAGGAGGGGAGAGCTTTGGCAAAAGGGTGTTTTGTTATTTTACTTCTATTGATTTTACTTCTTTGTAACACAGAGGGGTTGAATACAGAGGGGCAAATCCTCCTAGAGCTTAAGAATGGACTTCATGATGAACTTAATCTTTTGGGAAATTGGAAGTCTACTGATGAAACCCCATGTGGATGGACAGGTGTAAATTGCAGTTATGAATATAGCAGTAATAACAATCCAGTGGTGGTGTCTCTTAATTTGAGTTCTATGGGTCTTTCAGGAACTCTAAATGCTAGCATTGGGGGTCTGACCCATTTAACTTATCTCAATCTTGCTTACAATGATCTGATTGGAAATATCCCCAAGGAGATTGGTGAGTGCTTGAGTTTGGAGTATCTTTACTTGAACAATAACCATTTTGAGGGACCAATTCCTTCTGAATTGAGTAAGCTTTCTGTCTTGAGAAATTTGAATATTTGCAACAATAAACTCTCTGGTGTTATTCCAGATGAGTTTGGAAACTTGTCTTCATTGGTTGAATTAGTGGCCTATAGCAACTTCCTTGTTGGCCCCCTGCCTAATTCCATTGGAAATCTTAAGAATCTTGCTTCTTTCAGAGCTGGGGCAAATAACATTACAGGTACCTTGCCAAAGGAAATTGGCAGATGTAAGAACTTGATACGTCTTGGTCTTGCTCAAAATCAGATAGGAGGGGAGATACCAAGTGAGATTGGGATGCTCAGCAGCTTAAAGGAGCTGATTTTATGGGAAAACCAGTTTTCAGGACCTATTCCTAAAGAGCTTGGAAACTGTAGCAGTCTTGAGACCCTTGCTTTATATGGCAATAATCTTATTGGACCTCTACCTCCAGAGATTGGGAACCTCAAATCATTGAAGTGGTTGTATCTTTACAGAACTAAGTTGAATGGGACCATTCCAAGGGAAATTGGAAATCTTTCTTCAGCTATAAACATTGATTTCTCAGAGAACTCTTTAGTAGGTGATATCCCTTCAGAGTTCAGCAAAATAAGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCAGCTAACTGGTGTTATACCAGATGAGTTTAGTAACTTGAAGAACCTTACAAAGTTAGACCTGTCACTGAATCATCTTACAGGTTCAATTCCACTTGGCTTCCAATACTTGACTCAAATGTTTCAGTTGCAACTTTTTGACAACTCCCTAAGTGGTATTATTCCTCAGGGACTTGGACTTCACAGTCCTCTTTGGGTGGTTGATTTTTCTGACAACAAATTGACAGGAAGAATACCTCCTCATCTCTGCAGAAATTCTCGCTTGATGTTATTGAATCTGGCAGGTAATCAACTTTATGGAAATATACCCACAGGGATATTGAACTGTGAATCATTGGCACAATTGGTGTTAACTGGAAACAGGCTTACTGGTGGCTTCCCTTCAGAATTGTGTAAACTGGAGAACCTTACTGCCATTGATTTGAATGAGAACAGGTTCAGTGGTCCACTTCCTCCTGAGATTGCAAACTGCCACAAATTGCAAAGGCTTCATATTGCAAACAATTACTTCATATCCAATTTGCCTAAGGCAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCATCAAATCTTTTCACTGGAAGAATCCCACCTGAAATTTTTTGGTGCCAAAGGCTCCAGAGGCTTGATCTCAGTCAGAATAGCTTTACTGGTTCCTTGCCAAGTGAGATTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCAGACAATAAGCTGTCTGGATACATTCCTGCATCCTTAGGTAATCTGTCTCATCTGAACTGGTTGCTGATGGGTGGAAATTTGTTTTCTGGTGAAATACCTTCCCATTTGGGTTCTCTTTCAAGTTTACAGATTGGAATGGATCTCAGTTACAATAATCTTTCTGGAAGAATACCATCTCAGCTTGGCAATCTCAATATGCTTGAATATCTCTTGCTCAATAACAACCATTTGGATGGTGAAATTCCCAGCACCTTTGCAGAACTTTCAAGCTTGTTGGGGTGTAATTTCTCATACAATAACCTCTCTGGACCTATACCTTCCACTAAAATTTTCCAAAGTATGGATGTGAGCAGCTTTATTGGTGGTAATAAAGGCCTTTGTGGTTCACCTCTCGGTGACTGCAACACCAATCCAGCTTCTCACTCTGATCCTTCAGGGGAAAGTGTTGAGTCTCCTCGTGCTAAAATTGTCATGATCATTGCAGCTCTTGTTGGTGGTGTTTCTCTCATTTTGATTATAGTTATTTTGTATTATATGAGACGTCCTAGGGAGTCTGTTGATTCCTTTAGAGACACTGAGAGTCCCTCCCCAGATTCTGATATCTATTTCCCTCCAAAGGAAGGTTTCACATTTCAAGATCTAATTGAAGCTACAAAAAGATTTCATGAAAGTTATGTTATTGGTAGAGGAGCATGTGGAACAGTTTATAAGGCAGTGATGAAATCTGGTAAGACAATTGCTGTTAAGAAGTTAGCATCCAACAGGGAAGGGAACAACATTGAGAATAGTTTCAGGGCTGAAATATTGACTCTGGGAAGGATAAGGCATAGGAATATAGTGAAGTTGTATGGCTTTTGCTATCACCAAGGTTCCAATCTCCTTCTTTATGAGTACATGGAAAGGGGTAGCTTAGGTGAACTATTACATGGTTCTGCAAGTAATTTGGAGTGGCCAACTCGGTTCATGATTGCCCTTGGAGCTGCTGAGGGTCTTGCCTACTTGCATCATGACTGCAAACCAAAGATCATTCACCGTGACATAAAGTCTAATAACATTCTTCTTGATGAAAATTTTGAGGCCCATGTTGGTGATTTTGGCTTGGCAAAAGTGATTGATATGCCCCAATCAAAATCAATGTCTGCAGTTGCTGGATCTTATGGGTATATTGCTCCTGAATATGCATATACCATGAAGGTGACAGAAAAGTGTGACATATATAGTTATGGTGTTGTGCTCTTGGAATTGCTAACTGGAAGAACACCAGTTCAGCCACTGGAGCAAGGAGGTGATCTTGTCACATGGGTAAGAAACCATATCCGGGAGCATAACAATACATTGACATCAGAGATACTTGACAGCCGTGTGGATCTTGAAGACCAAATCACCACAAATCACATGCTCACTGTTTTGAAACTTGCTTTAGTCTGCACAAGTATGTCTCCTTCTAAGAGGCCATCAATGCGGGAAGTTGTGTCCATGCTCATTGAGTCTAATGAGAAAGAAGGAAACTTAACACTCACTCAAACATACCATGATCTTCCTACCAAAGATGGCATATGA 3339 0.4016 MSGNIKEGRALAKGCFVILLLLILLLCNTEGLNTEGQILLELKNGLHDELNLLGNWKSTDETPCGWTGVNCSYEYSSNNNPVVVSLNLSSMGLSGTLNASIGGLTHLTYLNLAYNDLIGNIPKEIGECLSLEYLYLNNNHFEGPIPSELSKLSVLRNLNICNNKLSGVIPDEFGNLSSLVELVAYSNFLVGPLPNSIGNLKNLASFRAGANNITGTLPKEIGRCKNLIRLGLAQNQIGGEIPSEIGMLSSLKELILWENQFSGPIPKELGNCSSLETLALYGNNLIGPLPPEIGNLKSLKWLYLYRTKLNGTIPREIGNLSSAINIDFSENSLVGDIPSEFSKISGLSLLFLFENQLTGVIPDEFSNLKNLTKLDLSLNHLTGSIPLGFQYLTQMFQLQLFDNSLSGIIPQGLGLHSPLWVVDFSDNKLTGRIPPHLCRNSRLMLLNLAGNQLYGNIPTGILNCESLAQLVLTGNRLTGGFPSELCKLENLTAIDLNENRFSGPLPPEIANCHKLQRLHIANNYFISNLPKAIGNLSQLVTFNVSSNLFTGRIPPEIFWCQRLQRLDLSQNSFTGSLPSEIGTLQHLEILKLSDNKLSGYIPASLGNLSHLNWLLMGGNLFSGEIPSHLGSLSSLQIGMDLSYNNLSGRIPSQLGNLNMLEYLLLNNNHLDGEIPSTFAELSSLLGCNFSYNNLSGPIPSTKIFQSMDVSSFIGGNKGLCGSPLGDCNTNPASHSDPSGESVESPRAKIVMIIAALVGGVSLILIIVILYYMRRPRESVDSFRDTESPSPDSDIYFPPKEGFTFQDLIEATKRFHESYVIGRGACGTVYKAVMKSGKTIAVKKLASNREGNNIENSFRAEILTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPLEQGGDLVTWVRNHIREHNNTLTSEILDSRVDLEDQITTNHMLTVLKLALVCTSMSPSKRPSMREVVSMLIESNEKEGNLTLTQTYHDLPTKDGI. 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04430 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Seca8g04430 1112 Gene3D Ribonuclease Inhibitor 34 154 IPR032675 -
Seca8g04430 1112 Gene3D Phosphorylase Kinase; domain 1 782 891 - -
Seca8g04430 1112 Gene3D Ribonuclease Inhibitor 155 415 IPR032675 -
Seca8g04430 1112 Gene3D Ribonuclease Inhibitor 416 731 IPR032675 -
Seca8g04430 1112 SUPERFAMILY Protein kinase-like (PK-like) 790 1087 IPR011009 -
Seca8g04430 1112 Pfam Protein kinase domain 815 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04430 1112 SMART serkin_6 814 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04430 1112 Gene3D Transferase(Phosphotransferase) domain 1 892 1105 - -
Seca8g04430 1112 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 194 287 - -
Seca8g04430 1112 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 31 193 - -
Seca8g04430 1112 Pfam Leucine rich repeat 346 405 IPR001611 GO:0005515
Seca8g04430 1112 Pfam Leucine rich repeat 562 620 IPR001611 GO:0005515
Seca8g04430 1112 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515
Seca8g04430 1112 SUPERFAMILY RNI-like 325 701 - -
Seca8g04430 1112 SMART LRR_typ_2 657 680 IPR003591 -
Seca8g04430 1112 SMART LRR_typ_2 152 175 IPR003591 -
Seca8g04430 1112 SMART LRR_typ_2 584 608 IPR003591 -
Seca8g04430 1112 SMART LRR_typ_2 536 560 IPR003591 -
Seca8g04430 1112 SMART LRR_typ_2 296 320 IPR003591 -
Seca8g04430 1112 SMART LRR_typ_2 368 391 IPR003591 -
Seca8g04430 1112 SMART LRR_typ_2 248 272 IPR003591 -
Seca8g04430 1112 SMART LRR_typ_2 104 128 IPR003591 -
Seca8g04430 1112 SMART LRR_typ_2 488 512 IPR003591 -
Seca8g04430 1112 SUPERFAMILY L domain-like 34 313 - -
Seca8g04430 1112 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 779 891 - -
Seca8g04430 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 467 1087 - -
Seca8g04430 1112 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 416 731 - -
Seca8g04430 1112 ProSiteProfiles Protein kinase domain profile. 814 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04430 1112 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 288 392 - -
Seca8g04430 1112 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Seca8g04430 1112 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 892 1104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04430 Seca-Chr8 126392174 126396085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04430 32 1089 Receptor kinase-like Gene Family AT5G56040 37.616 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g04430 Pkinase 1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04430 - - gmx:100805792 1856.65