Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04426 ATGGAGGTCCTTGGTTCTGTGGATGACCTCTTGGATTTCTCATCAGACATAGGTGAGGAAGATGATGATGACAATAAATCTAGGAAAGCCTTTACTTCACTTAACCCAAAATGCAGTAATCCACCATCGTTCAACCCATTGGACCTGGATGATCCTAGCCATTCATTTTCTCAGGAGTTTGCAGAAGAGGAGCTCGAATGGCTATCCAACAAAGATGCATTTCCTGCTGTTGAAACATTTGTTGACATGCCCTCTATTCAACCTGATATATCAAAGCATCAAAAGACAGCTCCAATGCTTGAGTACAGCACAAGCAGTAGCAACAGTAATAACAGCACCAACAGTGTTAGCCTCTTAAATGGCTATGATCACCTGAAAGTCCCTGTCCGTGCACGGAGCAAGAGTCGTACTAGACGTCGCTCTGGCATTGCTGACATCTCTGGCCAACAATTCTGGTGGACACAACCTAGTAACAAAAATTCCAAAGAAGAAGAAGTGATCAAAATGTCAACCATTGGGAGGAAATGTCATCACTGCGGAGCTGAAAAAACTCCACAATGGAGGGCTGGTCCCCTTGGTCCAAAGACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGCCGGCTTGTGCCTGAATACCGTCCTGCAAGTAGCCCAACTTATCGTAGTGACTTGCATTCTAATTCCCACAGGAAGATAATTGAGATGAGGAGGCAGAAGCAAGTAGGAATGGTTTAA 741 0.4453 MEVLGSVDDLLDFSSDIGEEDDDDNKSRKAFTSLNPKCSNPPSFNPLDLDDPSHSFSQEFAEEELEWLSNKDAFPAVETFVDMPSIQPDISKHQKTAPMLEYSTSSSNSNNSTNSVSLLNGYDHLKVPVRARSKSRTRRRSGIADISGQQFWWTQPSNKNSKEEEVIKMSTIGRKCHHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTYRSDLHSNSHRKIIEMRRQKQVGMV. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04426 246 Pfam GATA zinc finger 176 209 IPR000679 GO:0006355|GO:0043565
Seca8g04426 246 MobiDBLite consensus disorder prediction 1 54 - -
Seca8g04426 246 FunFam GATA transcription factor 164 246 - -
Seca8g04426 246 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
Seca8g04426 246 PANTHER GATA TRANSCRIPTION FACTOR 6 242 - -
Seca8g04426 246 ProSiteProfiles GATA-type zinc finger domain profile. 170 206 IPR000679 GO:0006355|GO:0043565
Seca8g04426 246 CDD ZnF_GATA 175 223 IPR000679 GO:0006355|GO:0043565
Seca8g04426 246 SMART GATA_3 170 220 IPR000679 GO:0006355|GO:0043565
Seca8g04426 246 Gene3D - 170 223 IPR013088 GO:0006355|GO:0008270
Seca8g04426 246 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04426 Seca-Chr8 126313068 126318117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04426 1 244 C2C2-Gata Transcription Factor Family AT3G24050 40.511 3.47e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca8g04426 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04426 - - gmx:100784527 370.933