Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04384 ATGTATTGGGGTGGAGTGATGCAAGGCCATATGGGTAGGGGTATCATAGAGGAAGAGGTATGGAGGAAGGGACCATGGACTGCTGAAGAGGACAGGTTGCTTATTGAGTATGTCAGGCTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGACTGAAAAGGAATGGTAAGAGCTGCAGATTGAGATGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTCTAGAGCTTCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTACTGGAGGACCCATTTCAAGAAAAAGGCAAAAAGTCCTTCTGATGCTGCTGAAAAGGCTAAAAATAGGCTCCTCAGGAAGCAGCTATTCCACCAGCAGCAGCAACAACAGTTGCAGCAGCAGGTGCAACAGCAGCAACAACAACTTCAATTCAACTTGGACATGAAAGGGATCATGGCCTTGCTTGAGGATAACAGCCATAGAGTGCCTTATATATCTCAAGGGAGACAAGAAATGGTCAACATGTGTCCAAACACCACAGAAGAGCAGGGGTACTTATACTCTATGCTTAATGGCAACACCTCTGCACCAGAGGCCTCAGCAGATGAAATTTTGTGGGATGGACTGTGGAACTTGGATGATGTTCAAGGAAATTTCAGTGTAGCTAATGCAACAAACAAAGCTGGTCTATACAATTTAGTTGCTCCCTTCTGTTAA 783 0.4534 MYWGGVMQGHMGRGIIEEEVWRKGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKAKNRLLRKQLFHQQQQQQLQQQVQQQQQQLQFNLDMKGIMALLEDNSHRVPYISQGRQEMVNMCPNTTEEQGYLYSMLNGNTSAPEASADEILWDGLWNLDDVQGNFSVANATNKAGLYNLVAPFC. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04384 260 FunFam MYB-related transcription factor 80 124 - -
Seca8g04384 260 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Seca8g04384 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Seca8g04384 260 SMART sant 75 123 IPR001005 -
Seca8g04384 260 SMART sant 22 72 IPR001005 -
Seca8g04384 260 CDD SANT 80 121 IPR001005 -
Seca8g04384 260 Coils Coil 143 163 - -
Seca8g04384 260 Gene3D - 80 124 - -
Seca8g04384 260 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Seca8g04384 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Seca8g04384 260 FunFam Myb transcription factor 23 75 - -
Seca8g04384 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 196 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca8g04384 260 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Seca8g04384 260 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Seca8g04384 260 CDD SANT 25 70 IPR001005 -
Seca8g04384 260 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Seca8g04384 260 Gene3D - 23 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04384 Seca-Chr8 125218485 125219609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04384 18 260 MYB Transcription Factor Family AT3G24310 60.837 2.74e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g04384 Myb_DNA-binding 6.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04384 K09422 - gmx:100795981 453.751