Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04383 ATGTCGCTGCCGGAATGTTCCGCGTCGCAACTGGCGCAGTTCATCGGCCCCAACGCGACAAACGCCGCCGCCGCCGCCAGTTTAATCTGCGACCAGTTCGCCGCTGTAGGGAACAAGTTCACAGACACAGCATTTGCGGTGGACAACACCTACCTTCTCTTCTCAGCCTATCTAGTTTTCTCTATGCAGCTCGGTTTCGCCATGCTCTGTGCCGGTTCAGTTCGCGCAAAGAACACCATGAACATCATGCTTACCAACGTCCTTGACGCCGCCGCCGGTGGCCTCTTCTACTACCTCTTCGGCTTCGCTTTTGCCTTCGGTGCACCTTCCAACGGCTTCATCGGCCGCCACTTCTTCGGACTCAAAGACGTTCCTACGACAGACTTTGACTACAGTAACTTCCTTTACCAGTGGGCTTTTGCCATCGCCGCCGCCGGCATCACCAGCGGATCCATCGCCGAACGGACACAGTTCGTGGCTTACCTTATTTACTCTTCCTTCCTCACCGGCTTTGTCTACCCTGTGGTTTCTCACTGGTTCTGGTCTGCTGATGGCTGGGCCAGCGCCTTTAACACCGGAGACCTGTTATTTGGCACCGGAGTGATCGACTTTGCCGGCTCCGGCGTCGTCCATATGGTCGGCGGAATCGCTGGTCTCTGGGGTGCCCTAATTGAAGGTCCTAGAATAGGACGTTTTGACCATACCGGTCGAGCCATTGCGCTTCGTGGACACAGCGCTTCTCTCGTTGTTCTTGGAACCTTCATGCTTTGGTTCGGTTGGTACGGTTTTAACCCCGGCTCCTTTAACAAGATTCTCAACGCCTATAATTCAGGTAACTATTACGGACAGTGGAGTGCGGTGGGAAGGACCGCCGTGACGACCACGTTGGCTGGCTGCACGGCGGCGCTGACTACTCTTTTTGGGAAAAGGATTCTCTCCGGTCACTGGAACGTTACCGATGTGTGTAACGGTTTGTTGGGCGGGTTTGCTGCTATTACTGCTGGGTGCTCCGTTGTGGAGCCGTGGGCTGCCATCGTGTGTGGTTTCGTGGCTGCGGTGGTTTTGATCGCGTGTAACAGACTCGCGGAGAAGGTGCGTTTTGATGATCCGTTGGAAGCCGCGCAGCTTCACGGAGGTTGTGGCGCGTGGGGGGTTATATTCACCGCGTTGTTCGCTAAGGAGGAGTATGTGAACCAGGTTTACCCAGGTAAACCGGGTCGGCCTTATGGGTTGTTCATGGGTGGTGGAGGGAAGCTGTTGGGGGCGCACGTGATTCAGGTTTTGGTTATTACCGGTTGGGTCAGCGCCACCATGGGTCCTCTTTTCTATTTTCTGAATAAGATGAAGTTGCTTCGGATCTCCGCGGAGGATGAGCTTGCGGGTATGGATATGACCCGACATGGTGGTTTTGCTTATGCCTATGAGGATGAGTCGCACAAGCATGGGATTCAGTTGAGGAAGATTGAACCTAACGCTTCCACTCCTACTGCCACAGATTCATGA 1503 0.5462 MSLPECSASQLAQFIGPNATNAAAAASLICDQFAAVGNKFTDTAFAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGAPSNGFIGRHFFGLKDVPTTDFDYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSADGWASAFNTGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHTGRAIALRGHSASLVVLGTFMLWFGWYGFNPGSFNKILNAYNSGNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNRLAEKVRFDDPLEAAQLHGGCGAWGVIFTALFAKEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQVLVITGWVSATMGPLFYFLNKMKLLRISAEDELAGMDMTRHGGFAYAYEDESHKHGIQLRKIEPNASTPTATDS. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04383 500 NCBIfam ammonium transporter 48 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca8g04383 500 Pfam Ammonium Transporter Family 51 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca8g04383 500 FunFam Ammonium transporter 29 487 - -
Seca8g04383 500 Gene3D Ammonium transporter AmtB like domains 27 492 IPR029020 -
Seca8g04383 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca8g04383 500 PANTHER AMMONIUM TRANSPORTER 20 475 - -
Seca8g04383 500 SUPERFAMILY Ammonium transporter 47 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04383 Seca-Chr8 125140734 125143155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04383 5 500 Inorganic Solute Cotransporters AT4G13510 82.565 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04383 K03320 - jre:109010430 835.869