Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04381 ATGGCTGCCACAGCTGCTGCAGGCATAGCCTCCTTGTTTTCTTCTTCCATCAACACTGTCAAATGTCTCCGTTCCAAAAACTGCTCCATAGATCCTCTCATATCAACATCCTCAAACCGCATGTTAGCATCTTTGTCACAGTCCTACCTTGTAGAACCTTTGCCTATTGGTAACATCTCACACAAGTTGTGGCTGCCTAGAATTTCTGCTGCTGTTGCACAGGAAGAGGTGGTTGTGGCTGCTGAGGCTGATGATGCTGGTTTTGTTGAAGAGGAGGAAGTGGTAGAAGAAGAAGCCACTGAATCCCTTGTTGGCACCAAGCTTTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCACAACTTGCAGGGTTAATTGAGGAATATGGTAGCGCAGAACTAATTGAGGTTCTCTACAACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGTAATGCAGTAATAGAAAATCTTGATGGAAGAGTGTTCATGGGCCGAACCTTGCGGGTGAACTTTTCTGACAAACCAAAAGCAAAAGAACCATTGTACCCTGAAACTGAACATAAGCTTTTTGTTGGGAACTTGTCATGGTCAGTAACTTCTGAGAGTCTAACAGAAGTTTTTCAAGAATATGGAACTGTGGTTGGAGCTAGGGTCTTATATGATGGGGAAACTGGAAAGTCACGTGGTTATGGCTTTGTTTGCTTTTCTAAAAAATCAGAAATGGAAGCTGCCCTTGCATCCCTGAATGATGTGGAACTAGAAGGAAGAGCAATGCGTGTAAGCTTGGCTCAAGGAAAACGTTCAGAAGGTTAA 843 0.4306 MAATAAAGIASLFSSSINTVKCLRSKNCSIDPLISTSSNRMLASLSQSYLVEPLPIGNISHKLWLPRISAAVAQEEVVVAAEADDAGFVEEEEVVEEEATESLVGTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYNRDTGKSRGFAFVTMSCIEDCNAVIENLDGRVFMGRTLRVNFSDKPKAKEPLYPETEHKLFVGNLSWSVTSESLTEVFQEYGTVVGARVLYDGETGKSRGYGFVCFSKKSEMEAALASLNDVELEGRAMRVSLAQGKRSEG. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04381 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Seca8g04381 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Seca8g04381 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Seca8g04381 280 PANTHER OS02G0815200 PROTEIN 47 277 - -
Seca8g04381 280 Gene3D - 187 280 IPR012677 -
Seca8g04381 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Seca8g04381 280 SUPERFAMILY RNA-binding domain, RBD 191 277 IPR035979 GO:0003676
Seca8g04381 280 SUPERFAMILY RNA-binding domain, RBD 101 188 IPR035979 GO:0003676
Seca8g04381 280 FunFam 31 kDa ribonucleoprotein, chloroplastic 73 187 - -
Seca8g04381 280 FunFam 28 kDa ribonucleoprotein, chloroplastic 188 278 - -
Seca8g04381 280 Gene3D - 72 186 IPR012677 -
Seca8g04381 280 CDD RRM2_NsCP33_like 198 273 - -
Seca8g04381 280 SMART rrm1_1 198 271 IPR000504 GO:0003723
Seca8g04381 280 SMART rrm1_1 107 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04381 Seca-Chr8 125065177 125068367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04381 86 276 Eukaryotic Initiation Factors Gene Family AT3G16380 31.884 5.72e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04381 - - aprc:113871254 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04916 2 135729296 135732009 Seca8g04381 8 125065177 125068367 PCT