Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04377 ATGTCAAAGCGAGGACGTGGTGGTAGTGCTGGTAACAAGTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCCACGGTGAACTGTGCTGACAACACAGGGGCTAAGAATCTATACATCATATCCGTGAAGGGAATCAAGGGTCGCCTCAACAGGTTGCCATCTGCTTGTGTTGGTGACATGGTTATGGCTACTGTGAAAAAGGGGAAGCCTGATCTTCGGAAGAAGGTATTGCCTGCCGTTATTGTGAGACAGCGCAAGCCATGGCGAAGAAAGGATGGGGTCTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTAAATCCTAAGGGAGAAATGAAAGGTGAGAAATGCATTTATTTAAGTGTTGATCTTTTGCAATGTTAA 384 0.4557 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGEKCIYLSVDLLQC. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04377 127 SMART Ribosomal_L14_2 19 125 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca8g04377 127 SUPERFAMILY Ribosomal protein L14 11 118 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca8g04377 127 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
Seca8g04377 127 Pfam Ribosomal protein L14p/L23e 22 116 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca8g04377 127 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 20 116 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca8g04377 127 FunFam 50S ribosomal protein L14 2 118 - -
Seca8g04377 127 Gene3D Ribosomal protein L14 1 120 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca8g04377 127 Hamap 50S ribosomal protein L14 [rplN]. 19 125 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04377 Seca-Chr8 124908839 124912171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04377 1 115 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.391 2.65e-79 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04377 K02894 - mof:131155076 233.417