Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04375 ATGTTGCAGGATGTTATTCACCCACCACCACCACCACCGGCTGAGCAACTACCCATTGATGAAATTTCAAGCCCACTTAGTGCAAGAATTTTTGAACTCTGTGACCCTGAATTGTTCCCAGAGTCTCTGCAGAATTCTGAGGTTACCTCCAGCTCAAATTGTTGCCATGAAGAGAACTCTTCCTATGCAACAAATATATCCCCAACTTTAGATGTAGATAATAAGATCAATAGCAATAGCAATATAGTTACCACCCCATCTAGTACCACTACAACCAGCACCACCACCACCACCACTAACAACAACAATAACAACAACACAACAAACAGCAGTAACCTGTCTATTATCTTTGACTCCCAAGAAGAAATTGACAATGACATATCTGCCTCCATAGACTTCTCATCCTCTCCATCTTTTATTGTTCCCCCACTTATCCCAATCACAACTCAGCAGGAACAATTTGATTTCTCTTCAGCACAGCCCCATGTCCAACTAGAGGCAGGTTCAGTTTTGAAGGGCCTCCCTCAGTATTCCACTGACCCTGTTGTTGCACCTCTTATTGGGGCTCCATTACCATCTTTTTTTGAAGATGATTGTATATCTTCCATCCCTTCTTATGTGTCTCTTAACCCTTCATCTCCTTCTTGCTCTTATCTCAGTCCTGTCACTCCTGGCATAGGAGTATACATGCCTCCTGGCCCCCTTTGCACTGCCTTATCTGCTGACAGTTCTGGATTATTTAGTGGGAACATTCTTCTTGGTTCTGAACTGCAGACACAAGAATTTGACTACCAGGGAGAAAATGGTGGAACATATTGTACAGATTCAATTCAGAGGATGTTTAACCCACCAGACCTTCAGTTTCTCTACCAGGCACTTGGTACTGAGAGTCAGAAACTGGTAGCTGGGAGTGGGAGTTCTGCCACTTTGGCACCAGAAATCTCACACTTGGAGGACTCTACCTTAAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATTCACAGATACATGAAGAAGAGAAATGAAAGGAATTTCAGCAAGAAAATAAAGTATGCTTGCCGCAAAACTTTGGCAGATAGCCGGCCCCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTAGGAGAGACTCATAGACCAGCTTGTAGCAACCATGAAGAAGATGATGAGGAAATAGTTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCAATCCTTGATTTGA 1290 0.4271 MLQDVIHPPPPPPAEQLPIDEISSPLSARIFELCDPELFPESLQNSEVTSSSNCCHEENSSYATNISPTLDVDNKINSNSNIVTTPSSTTTTSTTTTTTNNNNNNNTTNSSNLSIIFDSQEEIDNDISASIDFSSSPSFIVPPLIPITTQQEQFDFSSAQPHVQLEAGSVLKGLPQYSTDPVVAPLIGAPLPSFFEDDCISSIPSYVSLNPSSPSCSYLSPVTPGIGVYMPPGPLCTALSADSSGLFSGNILLGSELQTQEFDYQGENGGTYCTDSIQRMFNPPDLQFLYQALGTESQKLVAGSGSSATLAPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDLGETHRPACSNHEEDDEEIVVKEDDDMVDSSDIFAHISGVNSFKCNYSIQSLI. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04375 429 MobiDBLite consensus disorder prediction 374 393 - -
Seca8g04375 429 ProSiteProfiles CCT domain profile. 332 374 IPR010402 GO:0005515
Seca8g04375 429 Pfam CCT motif 332 374 IPR010402 GO:0005515
Seca8g04375 429 MobiDBLite consensus disorder prediction 374 392 - -
Seca8g04375 429 MobiDBLite consensus disorder prediction 81 108 - -
Seca8g04375 429 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 114 391 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04375 Seca-Chr8 124865422 124870252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04375 311 381 C2C2-CO-like Transcription Factor Family AT5G24930 39.437 2.01e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g04375 CCT 5.7e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04375 - - gmx:100793417 599.742