Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04353 ATGAGTAGTAGTGCTCCTCATGTATGTCCCTTATGTAGGCGACAGCACAGGAGGTGTGATGGGAATTGTGAGTTTGGGCAGTTCTTTCCTGCCAACAGATCTGGTGACTTTGAGAATGCTTTGAGGCTCTTTGGCTTAAATAACATGTTAAGAATCATGCGTGTTGTGGAACCTGAACAAAGACAAGCTGCTGCAGATTCTATACTTAGAGAGGGTACCGCATGGACAAATAACCCAGGTCGTGGTTTACATGGTTATGAGTTACATCTTAGGTCACAAGTTGAATCTTCTTCAAGGGAATTGCAAATTGTGAATCAACTCCTTTCAATTTGTAAAGGACAGGTCAATCAACCAAATTTAAACTTTGGTGAAATGCATACTGGACACATGGGCGGTGTGGAACCTCACAAGTTGGAGACAAGTAATTTCCATGAAAAAGGAGAATCAAGCACTATTACATTGAAGGAGAAAAAGGATGAAGGGAAAGAGTCAGAGACACATGAGAAGGGAAAACAACCTATTGTTTATGAAGATGAGTCAGACTCAGAGGGTAGTGACTAA 561 0.4135 MSSSAPHVCPLCRRQHRRCDGNCEFGQFFPANRSGDFENALRLFGLNNMLRIMRVVEPEQRQAAADSILREGTAWTNNPGRGLHGYELHLRSQVESSSRELQIVNQLLSICKGQVNQPNLNFGEMHTGHMGGVEPHKLETSNFHEKGESSTITLKEKKDEGKESETHEKGKQPIVYEDESDSEGSD. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04353 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 150 - -
Seca8g04353 186 MobiDBLite consensus disorder prediction 126 186 - -
Seca8g04353 186 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Seca8g04353 186 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Seca8g04353 186 MobiDBLite consensus disorder prediction 130 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04353 Seca-Chr8 124359470 124360515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04353 9 95 AS2 family AT2G19820 43.182 2.90e-22 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g04353 LOB 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04353 - - aprc:113866120 151.369