Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04350 ATGGTAAGATCAGAGACTACTAATTCTAGTACTGAAGAAAGTGATCATCATGATCAGCAAGAAGTTCAAGATGACTCTGCAGGAACAAAAAGATCTTATGATTGCACATTCTGCAAAAGGGGTTTCACAAATGCACAGGCTTTAGGAGGCCATATGAATATTCACAGGAAAGAGAGAACCAACAAGGCCAAGCAAAACACACCCAACAATATTATTGATCAGGAATTCAAAGCCTCTCCTTTTGTTCCACAAGTTTCATCAAACCAACCCTCAAGGTATTACTGCATTTTGGAGACTACTCCAAGGAACCATGATATGTATTTTCAACCATCATCAGTGACTAATAATAGCACTAGAAACCACCCACCTGCTGCATGTACCTTTCAATATGATTTTCTTAACACAAGGTCTCATCAGTTAAGGAACCAAGAGCTGTTAGGTACCAATTTAAGTCTCCAAATTGGTTCAACACATGTGGATACTGATCAATTTATTGACAAAGATTGTGAAGGGGTGGACTTAGAGCTCAGGCTTGGTCACGATTCATATTCAGACTACTAA 561 0.3886 MVRSETTNSSTEESDHHDQQEVQDDSAGTKRSYDCTFCKRGFTNAQALGGHMNIHRKERTNKAKQNTPNNIIDQEFKASPFVPQVSSNQPSRYYCILETTPRNHDMYFQPSSVTNNSTRNHPPAACTFQYDFLNTRSHQLRNQELLGTNLSLQIGSTHVDTDQFIDKDCEGVDLELRLGHDSYSDY. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04350 186 MobiDBLite consensus disorder prediction 1 27 - -
Seca8g04350 186 Gene3D Classic Zinc Finger 7 91 - -
Seca8g04350 186 SUPERFAMILY beta-beta-alpha zinc fingers 30 60 IPR036236 -
Seca8g04350 186 PANTHER OS07G0101800 PROTEIN 13 181 - -
Seca8g04350 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Seca8g04350 186 MobiDBLite consensus disorder prediction 9 27 - -
Seca8g04350 186 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04350 Seca-Chr8 124179591 124180151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04350 33 119 C2H2 Transcription Factor Family AT5G43540 44.318 1.53e-16 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g04350 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04350 - - mtr:25483021 208.379