Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04343 ATGGAGGTAGCTGGAGGAGCTGATGTTGCTGAAAGTGTAGCACAGTTTGCAAGGAGGCGTCAGCGTGGTGTTTGTGTCCTTAGTGGGAGTGGCTCTGTGGCTAATGTTACCCTTAGACAACCAGCTGCACCTGGTGCTGTTGTGGCACTTCATGGCAGGTTTGAGATTCTATCCCTAACTGGGGCTTTTCTTCCAGGACCTGCCCCTCCAGGTGCCACAGGACTCACAGTGTACCTTGCTGGGGGACAGGGACAGGTTGTTGGAGGGAGTGTTGTTGGATCTTTGGTTGCTGCAGGACCTGTTATGGTCATTGCTGCAACTTTTGCTAATGCTACTTATGAGAGATTGCCACTTGAGGAGGAGGAGGATGGTGGTGGGAATGGGAATGGTAGTAACAGTGGTATCCAAGGAGGTGGTGGTGTTGGAGGGTCTCCTCCTGGAATTGGAAGTAGTGGGGGCCAGAATTTGCCACCAAATCTTATACCAAATGGAGGCCAAGTGGGACATGAGGCTTTTGCTTGGCCTCATGGAAGGCCTCCTTATTAA 546 0.5165 MEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLEEEEDGGGNGNGSNSGIQGGGGVGGSPPGIGSSGGQNLPPNLIPNGGQVGHEAFAWPHGRPPY. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04343 181 CDD DUF296 2 80 IPR005175 -
Seca8g04343 181 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 121 - -
Seca8g04343 181 FunFam AT-hook motif nuclear-localized protein 1 123 - -
Seca8g04343 181 MobiDBLite consensus disorder prediction 119 181 - -
Seca8g04343 181 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 109 IPR005175 -
Seca8g04343 181 Gene3D - 1 123 - -
Seca8g04343 181 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 176 IPR014476 GO:0003680
Seca8g04343 181 ProSiteProfiles PPC domain profile profile. 1 131 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04343 Seca-Chr8 123919451 123920041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04343 1 181 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 69.110 3.21e-74 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04343 - - gmx:102663643 244.202