Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04332 ATGGCGGAACATTCTGTAGCAGAAGGAGGAGGAACATTCCGCAATGTCCTCTCCCCGTCGAAGAACGACAATGTCGTTTTCGTAAACGGCAAACCCGTCCTCGTCGCCCAGCCCCTCACGGTAGTCCGTGCCCTAACCAGCACCGGCGGCGCCCGCGTTCTAGCGGCGCCGCTGAACCCCGACGAGTTCGACGCGTCCAAAACGCCGATGATCAAAGTGAAAGAGGAGCCGCATGAAGAAGAGAAAGCAAAAACGGTCTTCAACGTGGCTCAACCCGGACGGTCTATGCTTTCGTTCGACGATTTTCTTAAGGCTACGAACACAAAAGTCGCATCCGAAGAGGAGTGGCTGAAATCAATGGAAGTAGAACCACCGGTTCAAGCGATGGAAGGAGCTGTCGATGCTGACAAGGTTTGTGCAGAGAATGAGACAGTTAGGGATGAATCGGTTGAAGAATCACCGATTCAGGCTATGGAAGAGGTTTGTGCTGAGAAGGAGGCGGTCAATGTTGAACCGATTGAAGAACCACCGGTTCGAGCGATGGAAGAGGTTGACGATGTGGACAAGGTTTGTGCTGAGGAAGAGGCGGTCGAGGTTCAATCGGTTGAAGAACCACCGGTTCAAGCGATTGTAGAGGTTGTCGATGTGTACAAGGTTTGTGCGAAGAAAGAAGCGGCTAGGGATGAGGTGGTGAAGGTGGTGAAGAAGGAGGCGGTTGAAGAGAAGATCCCGAACCTTGAGGATGGTGAGTTTCCAAAAGAACGTGGGTGGTCGTTGTTGGGAAGGAAGGTCGAGGTTGCGATTTCCACTGCCAAAGGAGTGAAGAGATTGGTGGACAATGAGATTATTCATTTCAATTTCCCTCTCCAATATTCCAATTACAAGTTTCAATGGATAGTTCGCATCTCAACTAAGCGTTCTGGAGAGGTTGGGAGGATGCCGATGGAATGGGCAAAAACTGTCATTCCACTCATGGAATCTGGAAAAGTTAAGGTTCGAGGCCGATGCATTGCCACGCCATATAAACTGCAAATGATGCAAGAAATCATGTTGCTTGTCAGCTTTTACGTTCACTACTCTATATTCACGGATGTTGTTGATACATCTTGGAGGCTAGAGGCTAGTGGTAACATTAACTCTAGCGTTTATCCACTCCTTTCACTGTTTAATATGCTAGAAATTAAGCCACATCGGAAGGCTGACTTCACCCCGGAGGATATAGATTCTCGGAAGCGGTTGTTTAATCCAAAGAAGCTTGATGCAGATGAAGCTGCAGCATTTCCTATGATCAAGCGAAGAAAGGGTGGTGAGCCGATTCCAGCACAAAATGATGATGAACAAGCTCTTTCAGAGTCTACTTTGAATAAACTTGTTGGAGCTGCAGAGATCTTTGACCTGGAGGAGAAGCAACCACCGAGAACCTTGATGTGTACTCTAAAGCCTTATCAGAAGCAAGCACTCTATTGGATGTCAGAAATTGAGAAGGGAATTGATGTCGAATCTGCTGATAGAAACCTGCATCCTTTCTGGTCAGCCTACAATATATGCAATGGAAGGACAATTTATGTTAATGTTTTCACTGGGGAAGGGACGATTAAATTTCCAAAAGCAACACAGATGGCAAGAGGAGGGATTCTAGCGGATGCCATGGGACTTGGAAAGACTGTTATGACGATTGCTCTGATTCTAAGTAATCCAGGCAGAGAAAGGTCGGAAAACAGCGATTGGGAGAGTATATATGACAGTATTATCACAAATAAGAGGAAGCATGTTAACTCCTCATGTAAAGTAGAGGGTGGCACTCTAATTGTTTGTCCCATGGCCTTGTTAGGTCAGTGGAAGGATGAGCTTGAAACGCATTCAAAACCAGGCAGTATATCCATATTTGTTCATTATGGTGGGGGCAGAACCAATAGTGCCGAGTTGATCTCCGGGTATGATGTTGTCTTAACAACATACGGTGTCCTATCAGCTGCATTCAGAAGTGATGGGGTGAATAGCATCTACCACAGGGTCCAATGGCACAGGGTGGTGCTAGATGAAGCTCATACTATAAAAGCCCATAAAAGCCAGGTTGCCCAGTCTGCATTTGCTTTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACGCCGCTTCAGAATACACTAGAAGATTTATACAGCTTGTTATGTTTCCTGCGTGTCGAACCTTGGTGCAACTGGGAATGGTGGAGTAAGTTGGTTCAAAGGCCTTTTGATTATGGTGATCCAAGAGCTATAAAATTGGTCAAGGGCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACGAAGGATAGATATGGAAGGCCTATACTGGTCCTGCCACCAACTGATATTCAAGTGATTGAGTGTGAACAGTCAGAAACAGAACGTGACTTCTATGATGCCCTCTTCACTAGATCTAAAGTAAGTTATGCTGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTAATCACTATGCCAATATCCTCGACCTACTAATGCAGTTGAGGCGGTGCTGTAACCATCCATTTTTGGTTATGTGCGGAAGTGATTCCCAGAAATATGCAGACTTGAGCAGACTCGCAAGAAGATTCTTCCAGTCTAATACCGAATCATCCGATATATGTGGTCAAAGGGATCCATTACAACATGAGGAGTTGAACAAACTAGCTAGTAGATTCTTTCTGAAGTCTGATTCTGCTTCGCACTCTATCCAATCTCGTGGATACATTGATGAGGTTTTGGAGCATATTCAAAAGGGTGAAACCATTGAATGCTCTATATGTATGGAATCACCAGATGATCCTGTGTTTACACCATGTGCACATAGGTTCTGTAGAGAATGCCTATTCAATTGCTGGGGGACCTCAATGGGTGGTAAATGTCCAATCTGTCGTCAAGAGCTTAAGAAAGATGATCTGATTACTTCTCCATCAGAATGCCCGTTCAGGGTTGATACTGAGAACAATTTGACAGTGTCTTCAAAGGTTTCAAAGCTATTGGATTTCTTGCAACGTATTCAGAAGTCATCTTCTGACGAGAAAAGTATTGTCTTCAGTCAATGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGTAGAGGAATAGGTTATTTAAGATTTGAAGGGAAATTGTCTCAGAAACAGAGGGAGAAGGTTCTGAAAGAATTTAATGAAACAAGTGAGAAAAGGGTTTTGTTGATGTCACTAAGAGCTGGTGGCGTTGGGTTGAACTTAACTGCAGCTTCTAATGTTTTCCTTATGGATCCATGGTGGAACCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGTATAGGACAAAATCGAAGAGTTATTGTTAGGAGATTCATCGTGAAGGACACAGTGGAAGACCGATTGCAACAAGTTCAAGCCAGGAAACAGAGGATGATATCTGGTGCCCTCACCGATGATGAGGTTCGGTCTGCTAGGATTAAAGACCTAAAAATGCTATTCTCATGA 3504 0.4466 MAEHSVAEGGGTFRNVLSPSKNDNVVFVNGKPVLVAQPLTVVRALTSTGGARVLAAPLNPDEFDASKTPMIKVKEEPHEEEKAKTVFNVAQPGRSMLSFDDFLKATNTKVASEEEWLKSMEVEPPVQAMEGAVDADKVCAENETVRDESVEESPIQAMEEVCAEKEAVNVEPIEEPPVRAMEEVDDVDKVCAEEEAVEVQSVEEPPVQAIVEVVDVYKVCAKKEAARDEVVKVVKKEAVEEKIPNLEDGEFPKERGWSLLGRKVEVAISTAKGVKRLVDNEIIHFNFPLQYSNYKFQWIVRISTKRSGEVGRMPMEWAKTVIPLMESGKVKVRGRCIATPYKLQMMQEIMLLVSFYVHYSIFTDVVDTSWRLEASGNINSSVYPLLSLFNMLEIKPHRKADFTPEDIDSRKRLFNPKKLDADEAAAFPMIKRRKGGEPIPAQNDDEQALSESTLNKLVGAAEIFDLEEKQPPRTLMCTLKPYQKQALYWMSEIEKGIDVESADRNLHPFWSAYNICNGRTIYVNVFTGEGTIKFPKATQMARGGILADAMGLGKTVMTIALILSNPGRERSENSDWESIYDSIITNKRKHVNSSCKVEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTNSAELISGYDVVLTTYGVLSAAFRSDGVNSIYHRVQWHRVVLDEAHTIKAHKSQVAQSAFALSSHCRWCLTGTPLQNTLEDLYSLLCFLRVEPWCNWEWWSKLVQRPFDYGDPRAIKLVKGILRTLMLRRTKETKDRYGRPILVLPPTDIQVIECEQSETERDFYDALFTRSKVSYAVQFDQYVAQGKVLNHYANILDLLMQLRRCCNHPFLVMCGSDSQKYADLSRLARRFFQSNTESSDICGQRDPLQHEELNKLASRFFLKSDSASHSIQSRGYIDEVLEHIQKGETIECSICMESPDDPVFTPCAHRFCRECLFNCWGTSMGGKCPICRQELKKDDLITSPSECPFRVDTENNLTVSSKVSKLLDFLQRIQKSSSDEKSIVFSQWTSFFDLLENPLRSRGIGYLRFEGKLSQKQREKVLKEFNETSEKRVLLMSLRAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQNRRVIVRRFIVKDTVEDRLQQVQARKQRMISGALTDDEVRSARIKDLKMLFS. 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04332 1167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 535 729 IPR014001 -
Seca8g04332 1167 SMART helicmild6 1031 1114 IPR001650 -
Seca8g04332 1167 Pfam Helicase conserved C-terminal domain 1002 1114 IPR001650 -
Seca8g04332 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 767 IPR027417 -
Seca8g04332 1167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 911 984 IPR013083 -
Seca8g04332 1167 CDD DEXDc_SHPRH-like 479 767 - -
Seca8g04332 1167 CDD RING-HC 929 969 - -
Seca8g04332 1167 ProSitePatterns Zinc finger RING-type signature. 945 954 IPR017907 -
Seca8g04332 1167 Pfam HIRAN domain 268 351 IPR014905 GO:0003676|GO:0008270|GO:0016818
Seca8g04332 1167 Pfam SNF2-related domain 482 849 IPR000330 GO:0005524|GO:0140658
Seca8g04332 1167 SUPERFAMILY RING/U-box 919 976 - -
Seca8g04332 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1003 1163 IPR001650 -
Seca8g04332 1167 FunFam DNA repair protein RAD5B 532 768 - -
Seca8g04332 1167 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 292 1166 - -
Seca8g04332 1167 ProSiteProfiles Zinc finger RING-type profile. 930 970 IPR001841 -
Seca8g04332 1167 SMART ultradead3 475 737 IPR014001 -
Seca8g04332 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 780 1158 IPR027417 -
Seca8g04332 1167 Gene3D - 529 768 IPR038718 -
Seca8g04332 1167 SMART HIRAN_2 260 357 IPR014905 GO:0003676|GO:0008270|GO:0016818
Seca8g04332 1167 CDD SF2_C_SNF 996 1125 - -
Seca8g04332 1167 SMART ring_2 930 969 IPR001841 -
Seca8g04332 1167 Pfam Zinc finger, C3HC4 type (RING finger) 929 974 - -
Seca8g04332 1167 Gene3D - 783 1167 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04332 Seca-Chr8 123662907 123669157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04332 177 1166 RAD5 or RAD16-like Gene Family AT5G43530 59.619 0.0 1206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g04332 SNF2_N 2e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04332 K15505 - gmx:100806677 1523.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04332 8 123662907 123669157 Seca8g04332 8 123662907 123669157 ECH