Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g04325 | ATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCCTCCTCCCACCGATTTCCTTTGGTCCAATCCAAGTGTGAGCACGGAAATTGACTTGCCGGGTGGTGCTGTTACCTGTCAAGAGAACACCAGGAAGAGGGGACGCACTGATTCATGCTGCAAGGCAGGGACAAAAGCTTGCCGTGAGAAGTTGCGGAGGGAGAAACTCAATGAAAGGTGTGCGTTTTGTGACTTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAAAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAGCTTAGAACTGAAGCTCAGGAACTCAAAGAAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTCCGTGAAGAGAAACTTGTTTTGAAAGCAGATAAAGAAAAGATTGAGAGGCAGTTGAAAGCTATGCCCATTCCACCTGCAGGGTTTATGCCTCCCCCTGTGGCTGCATATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCCATCTGCTCGAGATACATCCCATGATCATGAGCTCAGGCCTCCTGCTGCATAG | 651 | 0.4578 | MDSLEDSGCWDFLDYSFIDPPPTDFLWSNPSVSTEIDLPGGAVTCQENTRKRGRTDSCCKAGTKACREKLRREKLNERCAFCDLSSVLEPGRPVKTDKPAILDDAIRVLSQLRTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKIERQLKAMPIPPAGFMPPPVAAYQAGVNKMAVYPNYGYIPMWQYLPPSARDTSHDHELRPPAA. | 217 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g04325 | 216 | Coils | Coil | 102 | 157 | - | - | |
Seca8g04325 | 216 | CDD | bHLH_AtILR3_like | 64 | 141 | - | - | |
Seca8g04325 | 216 | Gene3D | - | 59 | 145 | IPR036638 | GO:0046983 | |
Seca8g04325 | 216 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 59 | 112 | IPR011598 | GO:0046983 | |
Seca8g04325 | 216 | PANTHER | BHLH TRANSCRIPTION FACTOR | 7 | 216 | IPR044818 | GO:0003700|GO:0006355|GO:0006879|GO:0046983 | |
Seca8g04325 | 216 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 65 | 139 | IPR036638 | GO:0046983 | |
Seca8g04325 | 216 | FunFam | Transcription factor bHLH104 | 62 | 145 | - | - | |
Seca8g04325 | 216 | Pfam | Helix-loop-helix DNA-binding domain | 63 | 112 | IPR011598 | GO:0046983 | |
Seca8g04325 | 216 | SMART | finulus | 65 | 118 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g04325 | Seca-Chr8 | 123498665 | 123502360 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g04325 | 40 | 216 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G14410 | 69.565 | 4.19e-81 | 241 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Seca8g04325 | HLH | 7.3e-05 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g04325 | - | - | gmx:100787583 | 362.844 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca8g04325 | 8 | 123498665 | 123502360 | Seca8g04325 | 8 | 123498665 | 123502360 | ECH |