Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04325 ATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCCTCCTCCCACCGATTTCCTTTGGTCCAATCCAAGTGTGAGCACGGAAATTGACTTGCCGGGTGGTGCTGTTACCTGTCAAGAGAACACCAGGAAGAGGGGACGCACTGATTCATGCTGCAAGGCAGGGACAAAAGCTTGCCGTGAGAAGTTGCGGAGGGAGAAACTCAATGAAAGGTGTGCGTTTTGTGACTTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAAAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAGCTTAGAACTGAAGCTCAGGAACTCAAAGAAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTCCGTGAAGAGAAACTTGTTTTGAAAGCAGATAAAGAAAAGATTGAGAGGCAGTTGAAAGCTATGCCCATTCCACCTGCAGGGTTTATGCCTCCCCCTGTGGCTGCATATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCCATCTGCTCGAGATACATCCCATGATCATGAGCTCAGGCCTCCTGCTGCATAG 651 0.4578 MDSLEDSGCWDFLDYSFIDPPPTDFLWSNPSVSTEIDLPGGAVTCQENTRKRGRTDSCCKAGTKACREKLRREKLNERCAFCDLSSVLEPGRPVKTDKPAILDDAIRVLSQLRTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKIERQLKAMPIPPAGFMPPPVAAYQAGVNKMAVYPNYGYIPMWQYLPPSARDTSHDHELRPPAA. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04325 216 Coils Coil 102 157 - -
Seca8g04325 216 CDD bHLH_AtILR3_like 64 141 - -
Seca8g04325 216 Gene3D - 59 145 IPR036638 GO:0046983
Seca8g04325 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 112 IPR011598 GO:0046983
Seca8g04325 216 PANTHER BHLH TRANSCRIPTION FACTOR 7 216 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Seca8g04325 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 139 IPR036638 GO:0046983
Seca8g04325 216 FunFam Transcription factor bHLH104 62 145 - -
Seca8g04325 216 Pfam Helix-loop-helix DNA-binding domain 63 112 IPR011598 GO:0046983
Seca8g04325 216 SMART finulus 65 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04325 Seca-Chr8 123498665 123502360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04325 40 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 69.565 4.19e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g04325 HLH 7.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04325 - - gmx:100787583 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04325 8 123498665 123502360 Seca8g04325 8 123498665 123502360 ECH