Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04324 ATGGATTTTCTAAGCAAAAAACACTTGCTCAATGTGTCACACACTTCATGTGAGTCAGAACATGGTTTTTCCCCTATCACAACTAATCCTCCTTTGGTTGGACATTATTCTGGTTCAAGTTTTCCCATCATAGCAACCATTGTAATAGGAATGTTTGCCACATCTTTCTTGCTCATGGGCTACTACATCTTTGTGATCAAGTGCTGCCTCAATTGGAACAGTGTTGATCTTGTAAGAATAAGGCGTTTTTCTCTATCTAGGCGATTTGAAGAGCCATCTGCAGCACAATCATCACATGCATCTGAGCATAGAGGACTAGAGGAAGCAGTGATTCGGTTAATTCCAGTGATTCATTACAAGACAGAAGAAGGAGACACAGAGAGTGGTGAAAGAAGCTTTTGTGAATGTGCTGTTTGCTTAAATGAGTTTCAACAAGATGAGAAGCTCAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGTGTAGACGTTTGGCTTCAGAACAATGCTAATTGCCCTCTTTGTAGAAGAAGCATTTCCTTGACAAGTGAAGTCCAAGTTGATCATCAGCTTCTCACTCCAAGGCCTTCCCCTCAGGATCAAAGACAAAATGTTGAAGGTTGTGATGAAGATTTTGTTGTGATTGATTTGGATAATGAACATGATGGAGACCAACACTTGCAAGAAAGACAAGGCCAAGAATTGGAGTTACCAACAGGTCCTATTGGTCCTTTGCACTGGAAATTAGAGCAGAGAATTTTGCAGAAGAAAGCAAAGCAGCTTCAAAAAGTAACCAGCATGGGGGATGAGTGTATTGGTAATAGAGACAAAGATGATGGGTTCTCAGTCCAAACTATTAGGAGGTCTTTCTCCATGGACTCATCAGAGCACAGAAAGTTCTATTTGACAGTTCAACTTCAACAAAATGGGCATGTCCATGAGGCCAGTTCTATTGAAGTTAGTGGTGCTAGTAGTGATAGAGCCAAGATATCATGTTTTTCCTTTGGACATGGAAGTAGATCCAGAAGTGCTATGTTACCTGTTTATTTGGACCCCTGA 1065 0.4075 MDFLSKKHLLNVSHTSCESEHGFSPITTNPPLVGHYSGSSFPIIATIVIGMFATSFLLMGYYIFVIKCCLNWNSVDLVRIRRFSLSRRFEEPSAAQSSHASEHRGLEEAVIRLIPVIHYKTEEGDTESGERSFCECAVCLNEFQQDEKLRVIPNCSHVFHIDCVDVWLQNNANCPLCRRSISLTSEVQVDHQLLTPRPSPQDQRQNVEGCDEDFVVIDLDNEHDGDQHLQERQGQELELPTGPIGPLHWKLEQRILQKKAKQLQKVTSMGDECIGNRDKDDGFSVQTIRRSFSMDSSEHRKFYLTVQLQQNGHVHEASSIEVSGASSDRAKISCFSFGHGSRSRSAMLPVYLDP. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04324 354 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Seca8g04324 354 PANTHER RING-H2 FINGER PROTEIN ATL16 27 350 IPR044600 GO:0016567|GO:0016740
Seca8g04324 354 SUPERFAMILY RING/U-box 135 184 - -
Seca8g04324 354 CDD RING-H2_EL5-like 135 178 - -
Seca8g04324 354 Pfam Ring finger domain 135 178 IPR001841 -
Seca8g04324 354 SMART ring_2 136 177 IPR001841 -
Seca8g04324 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 183 IPR013083 -
Seca8g04324 354 FunFam E3 ubiquitin-protein ligase ATL6 94 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04324 Seca-Chr8 123488986 123490050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04324 37 354 C3H Transcription Factor Family AT1G04360 44.413 2.15e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04324 - - gmx:100794749 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05655 8 148291133 148292173 Seca8g04324 8 123488986 123490050 PCT