Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04322 ATGGAGGAAGAAGGTGGTTCAAGAGGAAAAGGCAAAGATGAAGAGGAACATGTCAAGTATAGAGGTGTACGTAGGAGGCCATGGGGAAAATTTGCAGCAGAGATTCGTGACTCAACAAGACAGGGTCAGAGGTTGTGGTTAGGAACTTTCAACACAGCAGAGGAAGCAGCTAGAGCTTATGATAGAGCTGCTTTTGCCATAAGGGGTCCTTTTGCAGTCCTTAATTTCCCTAATGAATACCCTCCTTCAACAGCTTCTGCTTCTTCAGCTTCTGCTTCCTCTTCCACCACCAGGCATGAAAATGTTGAAGACAGAGGAAGGAGTAGTGAGCAAGAAGGAAAACAAGTCTTTGAGATTGAGTACTTTGATGACAAATTGTTGGAGGAACTTCTTGGTTATGAAGACAAAAAGAAAAAGGAATAA 423 0.4303 MEEEGGSRGKGKDEEEHVKYRGVRRRPWGKFAAEIRDSTRQGQRLWLGTFNTAEEAARAYDRAAFAIRGPFAVLNFPNEYPPSTASASSASASSSTTRHENVEDRGRSSEQEGKQVFEIEYFDDKLLEELLGYEDKKKKE. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04322 140 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Seca8g04322 140 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g04322 140 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Seca8g04322 140 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Seca8g04322 140 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
Seca8g04322 140 MobiDBLite consensus disorder prediction 98 116 - -
Seca8g04322 140 PANTHER DNA-BINDING DOMAIN 14 132 IPR044808 GO:0003700|GO:0009873
Seca8g04322 140 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Seca8g04322 140 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Seca8g04322 140 MobiDBLite consensus disorder prediction 77 116 - -
Seca8g04322 140 Coils Coil 136 140 - -
Seca8g04322 140 MobiDBLite consensus disorder prediction 79 97 - -
Seca8g04322 140 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Seca8g04322 140 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Seca8g04322 140 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04322 Seca-Chr8 123445010 123445432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04322 1 138 AP2-EREBP Transcription Factor Family AT3G23230 53.237 6.33e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g04322 AP2 2.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04322 - - gmx:100775830 181.8