Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04321 ATGGAGGAGCAATACAAGGGAAAGAAGCAGGACAAGTTGAAGGAGACAAGGGGAAGGAAAGAAGCTCGGTACCGAGGTGTCCGGCGGCGACCGTGGGGTAAGTATGCGGCGGAGATCAGAGACCCTTCAAAGCAAGGGTCACGACTGTGGTTGGGGACGTTTGATACAGCTGAAGAAGCTGCTAGAGCTTATGATCAAGCAGCCTTTAACTTGAGGGGTCATGTTGCACTTTTGAATTTTCCTAATGAGTACCATTCTCAAGTTAAGGATTATCCTTCAAATTTGGTACCATCCTCTTCCTCTTCAATTTTTCATCATGTCAGTGGCAGCAGCTCCTCTGGTGAACAAGGGAGGCAAGTTTTTGAGTTTGAGTATTTGGATGACACGGTGTTGGAGGAGCTTCTTGAGTCACAAGAGGAGAAAAAGAGGAAGAAAGGTTAA 441 0.4671 MEEQYKGKKQDKLKETRGRKEARYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDQAAFNLRGHVALLNFPNEYHSQVKDYPSNLVPSSSSSIFHHVSGSSSSGEQGRQVFEFEYLDDTVLEELLESQEEKKRKKG. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04321 146 Coils Coil 131 146 - -
Seca8g04321 146 Pfam AP2 domain 23 74 IPR001471 GO:0003700|GO:0006355
Seca8g04321 146 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g04321 146 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Seca8g04321 146 PANTHER DNA-BINDING DOMAIN 12 141 IPR044808 GO:0003700|GO:0009873
Seca8g04321 146 FunFam Ethylene-responsive transcription factor 2 22 82 - -
Seca8g04321 146 SMART rav1_2 23 87 IPR001471 GO:0003700|GO:0006355
Seca8g04321 146 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Seca8g04321 146 ProSiteProfiles AP2/ERF domain profile. 23 81 IPR001471 GO:0003700|GO:0006355
Seca8g04321 146 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Seca8g04321 146 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Seca8g04321 146 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Seca8g04321 146 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04321 Seca-Chr8 123432301 123432741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04321 20 142 AP2-EREBP Transcription Factor Family AT3G23230 64.286 2.23e-52 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g04321 AP2 3.4e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04321 - - gmx:100814296 167.162