Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04318 ATGGATTATTCCTCCACACCCCACTCATCAAGTTCCGATTTTTCGCCGGAATCTTCATTTGGGTCACCGGAATCGTTCACCTTGAACGATCACTGCCTCCCCTTCAATGAAAACGACCCAGAAGAGATGCTTCTATATGGCATGATCACATCATCAACACAACAAGGAACACTTAACAGTGGAACTTGCAGAGTGAAGGAGACAAGGAACAAGGAGAAGAACAAGGCTTATAGAGGCGTTCGGCGGCGGCCATGGGGGAAGTTCGCGGCGGAGATAAGGGACTCAACAAGGCATGGCATAAGGGTGTGGCTTGGAACATTTGATAGTGCTGAAGCAGCAGCACTTGCTTATGATCAAGCTGCTTTTTCCATGAGAGGATCTTCAGCAACCCTTAACTTCCCAGTTGAGAGGGTGAAGGAGTCACTTAGGGACATGAATTATCACCTTTCTCAAGATGATGGGTGTTCCCCTGTTGTGGCTTTGAAGAGAAAACACTCCATGAGGCGCAAAATGGGTACCAAGAAGAAGGAAGAAACAAATGTTAGGATAGACAATGTGGTTGTATTGGAGGATCTAGGTGCAGAATATTTGGAACAATTGTTGATGTCTTCTGACACTCAAAGTAGTTGGTGA 633 0.4597 MDYSSTPHSSSSDFSPESSFGSPESFTLNDHCLPFNENDPEEMLLYGMITSSTQQGTLNSGTCRVKETRNKEKNKAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSATLNFPVERVKESLRDMNYHLSQDDGCSPVVALKRKHSMRRKMGTKKKEETNVRIDNVVVLEDLGAEYLEQLLMSSDTQSSW. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04318 210 Pfam AP2 domain 77 126 IPR001471 GO:0003700|GO:0006355
Seca8g04318 210 Gene3D AP2/ERF domain 75 136 IPR036955 GO:0003700|GO:0006355
Seca8g04318 210 FunFam Ethylene-responsive transcription factor 2 75 136 - -
Seca8g04318 210 PANTHER DNA-BINDING DOMAIN 53 203 IPR044808 GO:0003700|GO:0009873
Seca8g04318 210 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Seca8g04318 210 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g04318 210 PRINTS Ethylene responsive element binding protein signature 116 136 IPR001471 GO:0003700|GO:0006355
Seca8g04318 210 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Seca8g04318 210 SUPERFAMILY DNA-binding domain 76 136 IPR016177 GO:0003677
Seca8g04318 210 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Seca8g04318 210 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04318 Seca-Chr8 123166200 123166832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04318 8 210 AP2-EREBP Transcription Factor Family AT3G23240 59.813 3.67e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g04318 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04318 K14516 - pvy:116118059 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04318 8 123166200 123166832 Seca8g05910 8 152078675 152079340 ECH
Seca8g05638 8 148107576 148108256 Seca8g04318 8 123166200 123166832 ECH
Seca2g04371 2 128659716 128660411 Seca8g04318 8 123166200 123166832 ECH
Seca8g04318 8 123166200 123166832 Seca8g04318 8 123166200 123166832 ECH
Seca8g05648 8 148190106 148190627 Seca8g04318 8 123166200 123166832 PCT