Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04311 ATGGAACGCAGGACTCTTGATGGTATCATCAATAGGCTGCTTGAAGTTAGGGGGAGACCAGGGAAACAAGTGCAGCTTTCAGAGGCAGACATCAAACAGCTTTGTATGGTCTCCAGAGATATCTTCTTGAAACAGCCCAATCTGTTGGAACTTGAGGCACCAATTAAGATATGTGGAGATATCCATGGTCAATATGCAGACCTTCTGAGACTTTTTGAGCATGGTGGATTGCCACCTCGTTCCAATTACTTGTTTTTAGGGGATTATGTGGATCGTGGAAAGCAAAGCTTAGAGACAATATGTCTTCTTCTGGCCTATAAAATAAAGTACCCTGAAAACTTTTTCCTTCTAAGGGGCAACCATGAATGTGCTTCTATAAACCGTGTGTATGGATTTTATGATGAATGTAAACGGAGATTCAATGTCAGGGTCTGGAAAATATTTTCAGATTGTTTCAACTGTTTGCCTGTGGCAGCTATCATTGATGAAAAGATAATTTGCATGCATGGTGGAATCTCTCCTGAATTGCACAATCTAAATCAGATAAGTTGTTTGCCACGTCCATCTGAAGTCCCTGAAACTGGTCTATTATGTGACCTCCTCTGGTCTGATCCTAGTAAAGACATTCAAGATTGGGGAATGAATGAACGTGGAGTTTCATATACTTTTGGTGCTAATAGGGTCACAGAATTTCTTGAAAAGCATGATCTTGACTTGATTTGTAGAGCCCACCAGGTTGTTGAAGATGGATATGAGTTTTTTGCTAATAGGCAACTTGTGACTATCTTCTCTGCTCCTAATTACTGTGGAGAGTTTGACAATGCTGGAGCAATGATGACGGTTGATGAGACACTTATGTGCTCTTTTCAGATATTAAGGCCTGTGGATCATAAAAGGCCTAAGTTTGGTTTTGGAAGTGCAACTACATTCAAGGCTAGTACTCCAACAGAAACCTTGGTATTTTAA 966 0.4037 MERRTLDGIINRLLEVRGRPGKQVQLSEADIKQLCMVSRDIFLKQPNLLELEAPIKICGDIHGQYADLLRLFEHGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRVWKIFSDCFNCLPVAAIIDEKIICMHGGISPELHNLNQISCLPRPSEVPETGLLCDLLWSDPSKDIQDWGMNERGVSYTFGANRVTEFLEKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVDETLMCSFQILRPVDHKRPKFGFGSATTFKASTPTETLVF. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04311 321 SUPERFAMILY Metallo-dependent phosphatases 18 301 IPR029052 -
Seca8g04311 321 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Seca8g04311 321 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Seca8g04311 321 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Seca8g04311 321 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Seca8g04311 321 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Seca8g04311 321 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Seca8g04311 321 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Seca8g04311 321 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Seca8g04311 321 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Seca8g04311 321 Gene3D - 1 303 IPR029052 -
Seca8g04311 321 SMART pp2a_7 26 296 IPR006186 GO:0016787
Seca8g04311 321 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 300 - -
Seca8g04311 321 CDD MPP_PP1_PPKL 6 294 - -
Seca8g04311 321 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Seca8g04311 321 FunFam Serine/threonine-protein phosphatase 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04311 Seca-Chr8 123091210 123095024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04311 33 239 Calmodulin-binding Proteins AT5G63870 30.769 2.31e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04311 K06269 - gmx:100780047 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04311 8 123091210 123095024 Seca8g05912 8 152185901 152189536 ECH
Seca8g04311 8 123091210 123095024 Seca8g04311 8 123091210 123095024 ECH