Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04298 ATGTCCGATCTGAAAGTGATGGCTGGAGAACTGGGAGTGCTGAATGCACTCGATGTTGCCAAGACACAATGGTACCATTTCACTGCAATTGTGATTGCTGGAATGGGTTTCTTTACTGATGCCTATGATCTCTTCTGCATTTCCCTTGTCACCAAGTTGCTAGGGCGGATATATTACACTGATCCAACAGCACCAAAGCCTGGAACTCTTCCTCCTAATGTTCAAGCTGCTGTAACTGGTGTTGCCCTTTGTGGGACATTAGCAGGCCAGCTATTCTTTGGTTGGCTTGGTGACAAGTTAGGAAGAAAAAAGGTCTATGGAATAACTCTTATTCTCATGGTTGTATGTTCCTTGGCCTCAGGGCTCTCTTTTGGAGCAAGTGCAAAAGGTGTCATGGCCACCCTATGTTTCTTCAGGTTCTGGCTTGGTTTTGGGATTGGTGGTGATTACCCCCTTTCTGCTACAATCATGTCTGAATATGCCAACAAAAAGACTCGAGGGGCATTCATAGCTGCAGTGTTTGCTATGCAGGGATTTGGAATCATGGCTGGTGGAATAGTTGCCTTGATTGTCTCTGCTGGATTTGACCACAAATACAAGGTTCCTAGCTATCAAGAAAATCCTCAAGCATCCTTGACAGCTCGTTACACAGCCCTTGTTGCCAAGAACGCCAAACAAGCTGCTACAGACATGTCCAAGGTGTTGAAAGTTGAACTTGAAGCTGAAGAGGAAAAGGTACAGAAAATTACAGAGGCTGATAGCAATAAGTATGGTTTGTTCAGCAAGGAATTTGCTAAACGCCATGGCCTGCATTTGGTGGGAACCACCACCACTTGGTTCTTGTTGGACATAGCATTCTATAGTCAGAACCTTTTCCAGAAGGACATTTTCAGTGCAATTGGATGGATCCCTCCTGCAAAGGAAATGAATGCAATCCATGAAGTTTATAAGATTGCAAGAGCACAAACACTGATAGCATTATGCAGTACTGTGCCAGGTTACTGGTTCACAGTAGCATTGATAGATTACATGGGTCGTTTTGCTATCCAATTGATGGGTTTCTTCTTCATGACTGTCTTTATGTTTGCTCTAGCCATACCATATGACCATTGGACCAAGAAAGAAAACAGAATTGGGTTTGTTGTGATGTACTCACTCACCTTCTTCTTCGCCAATTTTGGTCCAAATGCCACCACATTTGTTGTGCCAGCAGAGATCTTCCCTGCAAGGCTAAGGTCTACTTGTCATGGAATCTCAGCTGCTGCAGGAAAAGCGGGAGCAATTGTGGGTGCATTTGGATTTTTGTATGCTGCACAGAGTAAGGACCCTACCAAGACTGATAAAGGGTACCCAACTGGTATTGGGATTAAGAACTCCCTTATTATGCTTGGTGTGATCAACTTCGCTGGTATGTTATTCACCTTATTGGTTCCAGAATCAAAGGGAAAATCACTAGAGGAGTTGAGTGGGGAAAAAGAAGATGGTGCTGACGAGATTGAGCTACCAGCATCTGCTAGGACAGTTCCAGTTTGA 1533 0.4416 MSDLKVMAGELGVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTDPTAPKPGTLPPNVQAAVTGVALCGTLAGQLFFGWLGDKLGRKKVYGITLILMVVCSLASGLSFGASAKGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIMAGGIVALIVSAGFDHKYKVPSYQENPQASLTARYTALVAKNAKQAATDMSKVLKVELEAEEEKVQKITEADSNKYGLFSKEFAKRHGLHLVGTTTTWFLLDIAFYSQNLFQKDIFSAIGWIPPAKEMNAIHEVYKIARAQTLIALCSTVPGYWFTVALIDYMGRFAIQLMGFFFMTVFMFALAIPYDHWTKKENRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPTKTDKGYPTGIGIKNSLIMLGVINFAGMLFTLLVPESKGKSLEELSGEKEDGADEIELPASARTVPV. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04298 510 Pfam Sugar (and other) transporter 30 488 IPR005828 GO:0016020|GO:0022857|GO:0055085
Seca8g04298 510 MobiDBLite consensus disorder prediction 486 500 - -
Seca8g04298 510 Coils Coil 225 252 - -
Seca8g04298 510 SUPERFAMILY MFS general substrate transporter 17 489 IPR036259 -
Seca8g04298 510 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 482 IPR020846 GO:0022857
Seca8g04298 510 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 26 485 - -
Seca8g04298 510 FunFam Inorganic phosphate transporter 251 503 - -
Seca8g04298 510 CDD MFS_PhT 30 481 - -
Seca8g04298 510 Gene3D MFS general substrate transporter like domains 25 504 IPR036259 -
Seca8g04298 510 MobiDBLite consensus disorder prediction 486 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04298 Seca-Chr8 122777757 122780223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04298 10 510 Inorganic Solute Cotransporters AT2G38940 75.188 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04298 K08176 - gmx:100795623 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05633 8 147954399 147955973 Seca8g04298 8 122777757 122780223 PCT