Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca8g04292 | ATGGTTAGAGCTCCTTGCTGTGAAAAATTGGGACTCAAAAAGGGTCCTTGGACCCATGAGGAAGATGAAATCCTCATATCCTACATCCGAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAACAAGCTGCTCTGTTCAATTCCTTAGGGCTATTAAGATGTGGAAAGAGTTGCAGACTACGCTGGATTAACTATTTAAGACCTGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAATTATTATTAAGATGCATGAGTTGCTTGGGAACAGGTGGTCAGCAATCGCAGCAAAATTACCTGGAAGAACTGACAATGAAATTAAAAATGTGTGGCACACCCACTTGAAGAAGAGGCTACTCAAAACCAATAATAACCAACCCAATTCAGATACCAAAAGAGTTTCCAAACCAAGAATCAAACGATCTGATTCCAATTCCAGCACATTAACTCAATCAGAACCTACCAGTAATCTTGAATATTTCCCTGAAATGGAGACTGCATCAGCATGCACTTCTTCCAGTGATTTTTCATCATCAGTCATTAGTGAAGGACAAATTATGGATAACAGCATCAAGAGTGAAGACATAGAGTCTCTGGGGCCAATGCCTGAAATTGATGAAAGCTTTTGGTCAGACACAACTATGGATGATCATGAAAGCTCCACCATGCCATCAAATTCTTGGACAGTTTCAAATGAATTACCACCTCAATATCCATCTAATTCAGTGGAAACCTTTCAACAGAGTTATGGTTATAGTGCAAACTTTGATGATGGCATGGATTTCTGGTATGACTTGTTCATCAGAGCCGGGGAATCAATAGAACTGCCAGAGTTCTGA | 849 | 0.4028 | MVRAPCCEKLGLKKGPWTHEEDEILISYIRKHGHGNWRALPKQAALFNSLGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLKTNNNQPNSDTKRVSKPRIKRSDSNSSTLTQSEPTSNLEYFPEMETASACTSSSDFSSSVISEGQIMDNSIKSEDIESLGPMPEIDESFWSDTTMDDHESSTMPSNSWTVSNELPPQYPSNSVETFQQSYGYSANFDDGMDFWYDLFIRAGESIELPEF. | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca8g04292 | 282 | FunFam | Transcription factor MYB15 | 74 | 149 | - | - | |
| Seca8g04292 | 282 | ProSiteProfiles | Myb-like domain profile. | 68 | 118 | IPR001005 | - | |
| Seca8g04292 | 282 | SMART | sant | 13 | 69 | IPR001005 | - | |
| Seca8g04292 | 282 | SMART | sant | 72 | 120 | IPR001005 | - | |
| Seca8g04292 | 282 | SUPERFAMILY | Homeodomain-like | 11 | 114 | IPR009057 | - | |
| Seca8g04292 | 282 | MobiDBLite | consensus disorder prediction | 144 | 162 | - | - | |
| Seca8g04292 | 282 | FunFam | MYB-related transcription factor | 13 | 72 | - | - | |
| Seca8g04292 | 282 | Gene3D | - | 13 | 72 | - | - | |
| Seca8g04292 | 282 | Pfam | Myb-like DNA-binding domain | 14 | 67 | IPR001005 | - | |
| Seca8g04292 | 282 | Pfam | Myb-like DNA-binding domain | 73 | 118 | IPR001005 | - | |
| Seca8g04292 | 282 | CDD | SANT | 16 | 67 | IPR001005 | - | |
| Seca8g04292 | 282 | CDD | SANT | 75 | 118 | IPR001005 | - | |
| Seca8g04292 | 282 | ProSiteProfiles | Myb-like domain profile. | 9 | 67 | IPR001005 | - | |
| Seca8g04292 | 282 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 224 | - | - | |
| Seca8g04292 | 282 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 67 | IPR017930 | - | |
| Seca8g04292 | 282 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 68 | 122 | IPR017930 | - | |
| Seca8g04292 | 282 | Gene3D | - | 74 | 156 | - | - | |
| Seca8g04292 | 282 | MobiDBLite | consensus disorder prediction | 122 | 162 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca8g04292 | Seca-Chr8 | 122625247 | 122627204 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca8g04292 | 1 | 282 | MYB Transcription Factor Family | AT2G31180 | 49.301 | 1.66e-78 | 236 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Seca8g04292 | Myb_DNA-binding | 9.2e-14 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca8g04292 | K09422 | - | gmx:100806975 | 390.578 |