Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04283 ATGGCTCCGAAGAAGGGTGTAAAAGCTCCCGTCGCAGCTGCGAAGAAGAAACCGGAGAAGGTGACGAACCCATTGTTCGAGAAGCGTCCGAAGCAGTTTGGGATTGGAGGTGCGTTGCCACCGAAGAGGGACCTGACACGGTTCGTGAAGTGGCCGAAGACGGTTCAATTGCAGAGGAAGAAGAGGATCCTGAAGCAGAGGCTGAAGGTGCCACCAGCACTGAACCAGTTCACGAAGACACTGGATAAGAATCTGGCAACGAACCTTTTCAAGATGCTGCTGAAGTACAGGCCTGAGGATAAAGCAGAGAAGAAAGAGAGGCTTTTGAAAAGGGCTCAGGCAGAGGCTGATGGCAAACCTGTCGAAGCCAAGAAGCCTATTGTTGTCAAATACGGTCTCAATCACGTTACCTACCTCATTGAGCAGGTCCTCTCTTCTCTATTATTGAATAAAGCACAACTTGTTGTGATTGCTCATGATGTTGACCCGATTGAACTGGTTGTCTGGCTTCCGGCATTGTGTAGGAAGATGGAAATTCCCTACTGCATTGTCAAGGGCAAAGCCCGCTTGGGAACGATTGTCCATAAGAAAACTGCTTCAGTTTTGTGCTTGACAACTGTGAAGAATGAAGACAAATTGGAGTTCAGTAGAATCTTAGAGGCTATTAAGGCCAACTTCAACGACAAGTATGATGAATACAGAAAGAAGTGGGGTGGTGGGATTATGGGTTCCAAATCCCAAGCCAAGACCAGAGCCAAGGAAAGGCTCCTTGCCAAGGAAGCAGCCCAAAGAATGTCGTAG 801 0.4819 MAPKKGVKAPVAAAKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQLQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEADGKPVEAKKPIVVKYGLNHVTYLIEQVLSSLLLNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKERLLAKEAAQRMS. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04283 266 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g04283 266 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Seca8g04283 266 PRINTS Ribosomal protein L7A family signature 225 245 IPR001921 -
Seca8g04283 266 PRINTS Ribosomal protein L7A family signature 193 217 IPR001921 -
Seca8g04283 266 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Seca8g04283 266 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Seca8g04283 266 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Seca8g04283 266 Gene3D - 51 241 IPR029064 -
Seca8g04283 266 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 119 213 IPR004038 -
Seca8g04283 266 ProSitePatterns Ribosomal protein L7Ae signature. 174 191 IPR004037 GO:0042254|GO:1990904
Seca8g04283 266 FunFam 60S ribosomal protein L7a 51 241 - -
Seca8g04283 266 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 43 242 - -
Seca8g04283 266 SUPERFAMILY L30e-like 89 237 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04283 Seca-Chr8 122329829 122333270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04283 1 266 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 84.211 6.62e-168 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04283 K02936 - jre:108984551 472.241