Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04279 ATGGAAACTACAAGGCGCTGGTTTAGTAAGTTCAAGGCAAATGATAAAATGAAGTCTCCAAAACACAAGGAAGCTACAGGCATGACAAAAGAAGGGTTAAAACCCCCAACAAATGAAGAAGCCCCTTCAAATGTAACCAAACAGAAGGTTGAAGCTGCGAAACAGTACATAGAAAATCATTATAAGAAGCAGATGCAGAGCCTGCAGGAGAGGAAGGAAAGACGTTGTATGCTAGAAAAGAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAGCAGAACAACTTGCTTAAGTATCTAGAGAAAAAGGAGACAGAATACATGCGCCTCCAGAGACATAAGATGGGGGCTGATGACTTTGAGCCCCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTCAGAATCTGCCGGGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTTGAACATGTTAAAGCTGAGAGGAACTTGCTTGCAGAAGTTGACAGCAATTGTATTGTAAAACTTTATTGTTCCTTTCAAGATGATGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACGTTGCTGATGCGGAAGGATATACTGACAGAAGATGAAGCCAGGTTCTATGTCGGGGAGACTGTCCTAGCCATAGAATCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGATTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTGTTGGAATTAACAGAAGTGGAGCCCTTCAAAGTGATGGACGTCCTGCAGCTCCTAAACGAACACAACAGGAGCAACTGCAGCATTGGCAGAAAAATCGGCGGATGCTTGCGTATTCTACAGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTGCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCACCCTTTTATTCAGATGAACCAATGTCAACTTGTAGAAAGATAGTAAATTGGAGAACTCATTTAAAATTTCCAGAAGAAGCTAAACTATCAGCAGAGGCAAAGGATCTTATTTGTAGACTTCTATGTAACGTGGAGCAGAGACTTGGAACAAAAGGAGCCGAAGAAATAAAGGCCCACCCATGGTTCAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAATTTGAAGAGGTGGACAAGCAAATTGAACCTTCCACAAAGGCAGGGCCATGGAGAAAGGTTGGTTCTTATTCAAATTTTGTATATTGTTGGTGTGCAGGAGTTTCTGTAATCATCCCATTTGTTAATATCATCAATGTAGATTGGGCTATTATTTTTGTTATTTATAAAGAGTTTTTAATTTTGCAATCAGGGTTTTCTATTTGGGCTTATTTATTATTTAAGGATTTTATTCTGTTTTGGATTATTTTATTGCAACTTAGAATTGGAATAGCTTATTAG 1623 0.3906 METTRRWFSKFKANDKMKSPKHKEATGMTKEGLKPPTNEEAPSNVTKQKVEAAKQYIENHYKKQMQSLQERKERRCMLEKKLADAEVSEEEQNNLLKYLEKKETEYMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSVGINRSGALQSDGRPAAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSAEAKDLICRLLCNVEQRLGTKGAEEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVDKQIEPSTKAGPWRKVGSYSNFVYCWCAGVSVIIPFVNIINVDWAIIFVIYKEFLILQSGFSIWAYLLFKDFILFWIILLQLRIGIAY. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04279 540 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04279 540 Gene3D Transferase(Phosphotransferase) domain 1 203 269 - -
Seca8g04279 540 FunFam Non-specific serine/threonine protein kinase 203 270 - -
Seca8g04279 540 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04279 540 SMART pkinase_C_6 419 475 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca8g04279 540 CDD STKc_NDR_like 117 476 - -
Seca8g04279 540 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 486 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca8g04279 540 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Seca8g04279 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 453 - -
Seca8g04279 540 MobiDBLite consensus disorder prediction 1 29 - -
Seca8g04279 540 Gene3D Phosphorylase Kinase; domain 1 437 447 - -
Seca8g04279 540 SUPERFAMILY Protein kinase-like (PK-like) 93 458 IPR011009 -
Seca8g04279 540 CDD MobB_NDR_LATS-like 53 114 - -
Seca8g04279 540 MobiDBLite consensus disorder prediction 1 47 - -
Seca8g04279 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Seca8g04279 540 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Seca8g04279 540 Gene3D Phosphorylase Kinase; domain 1 117 202 - -
Seca8g04279 540 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04279 540 FunFam Non-specific serine/threonine protein kinase 90 202 - -
Seca8g04279 540 Gene3D Transferase(Phosphotransferase) domain 1 317 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04279 Seca-Chr8 122254445 122264942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04279 1 495 AGC Kinase Gene Family AT4G14350 81.616 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Seca8g04279 Pkinase 3.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04279 K08790 - gmx:100795087 912.909