Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04259 ATGGGAGTTAGAGATTTTCGTATCAAGCTCAAGGCATTCCGGCTGAAACGTTTTTTCTTAGGGAATAGAGGCAAAAAAAGAACTCATGGGATTGCAAACAAGCCTTCATGGATGGTGCCAATAACACATGGTCATCATGTGGTCGAGCATCGTGGAATCTTAGGTGGTTCTGATGACTCGGAATTTGATTCAGTTGTGATACAGAGAGAGCAAATGGATCACACAGAATTTTGGTATTTTGGAATCTTTGATGCTCTAATTGGAGATGGAGTTACCAAGTATATGCAATCCCATTTTTTTGACAAGAAGCTCAAAGAGTCTCATATGAAGAGAAAAACCAAAGAAACACTCAAGAGAGCTTACCTAGGAGCCAGAACAAAGATCAGAGAGGCAAACAAATCAGAGGAAACATGCAGAATAGGTTCAACATCTGTGATGGTGATAAATGGAGAAAAACTTGTGATTGCTAACATGGGAGATTACAGAACTGTTTTGTGCAGAGATGGTATAGCTTATCAGACAACCGGTAGAAACAATCAATCAGCCAAGGGACATTGGTACCGCAGACTCTTTTCAGTACTCATGATAGCATGTGAATCAGGCAATTCAACAGGCACAAAGCATTCTAAAGGTTCAGAACTTGTTGTGGGAGGTGACTGGGTCGACCCTGATACTGAATTTTTGATCTTGGCAAGCAATGGTATATGGGAGGTGATGAAGAACCAAGAGGCTGTGAATCTTATCTGGCACATAGAGGATCCACAAGAAGCAGCTGAGTGCTTGGCAAAGGAAGCTTTGATTAGGATGAGCAAAAGCAACATTTCATGCTTAATCATTCGCTTTGATTGA 849 0.4111 MGVRDFRIKLKAFRLKRFFLGNRGKKRTHGIANKPSWMVPITHGHHVVEHRGILGGSDDSEFDSVVIQREQMDHTEFWYFGIFDALIGDGVTKYMQSHFFDKKLKESHMKRKTKETLKRAYLGARTKIREANKSEETCRIGSTSVMVINGEKLVIANMGDYRTVLCRDGIAYQTTGRNNQSAKGHWYRRLFSVLMIACESGNSTGTKHSKGSELVVGGDWVDPDTEFLILASNGIWEVMKNQEAVNLIWHIEDPQEAAECLAKEALIRMSKSNISCLIIRFD. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04259 282 SMART PP2C_4 40 279 IPR001932 -
Seca8g04259 282 PANTHER PROTEIN PHOSPHATASE 65 280 IPR015655 GO:0004722|GO:0006470
Seca8g04259 282 ProSiteProfiles PPM-type phosphatase domain profile. 59 281 IPR001932 -
Seca8g04259 282 CDD PP2Cc 63 281 IPR001932 -
Seca8g04259 282 Gene3D - 54 282 IPR036457 -
Seca8g04259 282 SUPERFAMILY PP2C-like 63 282 IPR036457 -
Seca8g04259 282 Pfam Protein phosphatase 2C 74 173 IPR001932 -
Seca8g04259 282 Pfam Protein phosphatase 2C 222 274 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04259 Seca-Chr8 120941081 120943400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04259 1 281 PP2C-type Phosphatase Gene Family AT3G23360 45.745 6.67e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04259 K19704 - gmx:100794054 476.863