Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04251 ATGCATGTGTTGACAGTGATGGGGAAGACAGGCAAATGGCTTAGGAACTTGCTGACAGGGAAGAAAGACAAAGAAAAAGAGAAGGAAAAATGTGTAACAAACCTTAGTTTGTCAAATGGCACAGAAAATCCAACTACTCCAATGTCTACAACTCCCAAGGAGAAAAGAAGATGGAGCTTCCGGAGATCATCAGCTTCCAAGGAATTGAATGTTGCAGAATCAAGTTCCACTGCTGCTTCAGTGACAGTGCAAACTGCCACAGATGCTGAGAATGATCAGAGAAAGCATGCCACTGCAACTGATGCTGTGATCTGCTTGAATTCTGATTCCAATGGAGGAGCTAGAAGAAGTATTGAAGAGGCTGCTGCCATTAAAATTCAATCTGTTTTTCGGTCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGTTTAGTGAAGTTGCAAGCACTAGTAAGGGGTCACTTGGTAAGAAAACAGGCCACGGAGACACTAAGATGTATGCAAGCTTTGGTCATAGCACAAGCCAGAGCTTGTGCTCAGAGGGCTAGAATGGTGTCAGAAGGAAAGCCTAATCAAGAGCAATCAACCTACAGAAAAACCACAAAGGACAATTTATTCATGCATATGTATAATGAAATGGACAGAGGCTTGGAAGAGAATATCAAGATTGTGGAGATGGATGTTTGTGAATCCAAAGGCAACTCAAAAGGCAGAAACAGCAATGCAAATCATGGAAATCAGGAATTTTCTGAGCATAGATTTTCTGCATATTATTCACCAAATGGATCATACTCAAAGAAAGAAAACTTCAAGGCATCACCTGCACCATCAGCATTGACTGAGTTGAGTCCAAGAGCATGCAGTGGACATTTTGAGGACTGTACCTTCAATACAGCACAGAGCAGTCCCCATTGCTACTCTGCTATGTCAAGAATAGAGGATTCAAAGCTTCCTTTTGCTTTTCCTAAACCAGCCTATGCAGAATCCATGTCCTATGACTACCCTTTATTCCCAAATTACATGGCTAACACAGAATCATCAAGGGCCAAAGTCAGATCACAGAGTGCTCCAAAGCAAAGGCCAGACTCATTTGAAAGGCAACCAAGCCGGCGAAGAGCTTCAGTGGAAGGAAGAAATGTACCAAAACCAGTGAGGATGCAGAGGTCATCTTCACATGTGGGTGCCACTGCCCAAAACTACCAATATCCATGGTCAATAAAGCTTGACAGGTCCTCAGTTTCACTCAAAGACAGTGAGTGTGGCTCTACAAGTACAGTGCTCACAAACACTAACTACTGCAGATCTCTTGTTTCATATGATGTGAGTTCTTACTTCTTACCATTATCATATAACATGTTTTCACCATCCAGTTAA 1377 0.4248 MHVLTVMGKTGKWLRNLLTGKKDKEKEKEKCVTNLSLSNGTENPTTPMSTTPKEKRRWSFRRSSASKELNVAESSSTAASVTVQTATDAENDQRKHATATDAVICLNSDSNGGARRSIEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQATETLRCMQALVIAQARACAQRARMVSEGKPNQEQSTYRKTTKDNLFMHMYNEMDRGLEENIKIVEMDVCESKGNSKGRNSNANHGNQEFSEHRFSAYYSPNGSYSKKENFKASPAPSALTELSPRACSGHFEDCTFNTAQSSPHCYSAMSRIEDSKLPFAFPKPAYAESMSYDYPLFPNYMANTESSRAKVRSQSAPKQRPDSFERQPSRRRASVEGRNVPKPVRMQRSSSHVGATAQNYQYPWSIKLDRSSVSLKDSECGSTSTVLTNTNYCRSLVSYDVSSYFLPLSYNMFSPSS. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04251 458 Pfam Protein of unknown function (DUF4005) 323 380 IPR025064 -
Seca8g04251 458 MobiDBLite consensus disorder prediction 36 58 - -
Seca8g04251 458 MobiDBLite consensus disorder prediction 36 53 - -
Seca8g04251 458 PANTHER IQ-DOMAIN 5-RELATED 7 377 - -
Seca8g04251 458 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Seca8g04251 458 Pfam IQ calmodulin-binding motif 146 160 IPR000048 GO:0005515
Seca8g04251 458 MobiDBLite consensus disorder prediction 348 394 - -
Seca8g04251 458 ProSiteProfiles IQ motif profile. 119 147 IPR000048 GO:0005515
Seca8g04251 458 Gene3D - 118 173 - -
Seca8g04251 458 SMART iq_5 141 162 IPR000048 GO:0005515
Seca8g04251 458 SMART iq_5 118 140 IPR000048 GO:0005515
Seca8g04251 458 MobiDBLite consensus disorder prediction 348 363 - -
Seca8g04251 458 MobiDBLite consensus disorder prediction 364 379 - -
Seca8g04251 458 ProSiteProfiles IQ motif profile. 143 170 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04251 Seca-Chr8 120729835 120732079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04251 6 450 IQD Protein Family AT4G14750 46.764 5.27e-108 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04251 - - gmx:100817667 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04251 8 120729835 120732079 Seca8g04251 8 120729835 120732079 ECH