LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g04242	ATGAATCCTGTGAAGGAGGAGTTTCCTGAAGAAAATTGTTCCCACTCTGCTCCACAACCATTGGAGGGGCTTCATGAGAGTGGTCCTCCACCATTCCTCACAAAAACATATGACATGGTTGATAATGCTTCTACTAATCATGTAATTTCCTGGAGCAGAGGAAACAACAGTTTCATTGTGTGGGATCCTCAGGCATTTTCCATCAGCCTTCTCCCTAGATACTTCAAGCACAATAACTTTTCTAGCTTTGTCAGGCAACTTAACACCTATGGGTTTAGAAAGGTAGATCCAGATAGGTGGGAGTTTGCTAATGAAGGGTTTCTTAGAGGACAAAGGCATCTCTTGAAGAATATTAGGAGAAAGAAGACAACTCAGCCTCAGCCACCACAGCAAGTTCTGGACCCTTGTGTTGAACTGGGGCGGTTTGGATTAGATGGAGAAGTTGATAGGTTGAGGCGTGACAAACAAGTTCTCATGGTGGAGCTGGTGAAACTTAGACAACAACAGCAGAACACTAGAAACTACCTTCAATCAATGGAAGGTAGGCTAAAGAAAACTGAGCAGAAACAACAACAGATTATGAATTTCTTGGCAAGGGCAATGCAGAATCCTAACTTCTTGCAACAATTAGTTCAAAAGAAGGAATTGAGAAAGGAGTTGGAGGAAGCATTTTCCAAGAAAAGAAGAAGGCCTATTGATCAAGGTCCTAGTAATGTTGAGGTAGCTGAGTCAGGTTATGCTGAAGAATGTTCTGGTATGGTTAAACTTGAACAGCAGGAATACACTGACATGTCAGAGCTTGAGGTTTCAGACCTGGAACTTGCTATGAATATGGGGGAACAAAGTGGAAGCCAAAAGAACCTTGAGGAGAAAGGAGTTGAAATTGAAAGTAGAAATAAAGACATTGATGAAATGTTTTGGGAAGATTTTTTGAATGAGGGTGATGAAGAAGATCTACTAGGATTTAAGGAAGATGGTAAATATATCAACAATGTATTGGCTGAGGAACTTTGTTATTTAGCCTCAAGTAGTCCTAAATGA	1041	0.4073	MNPVKEEFPEENCSHSAPQPLEGLHESGPPPFLTKTYDMVDNASTNHVISWSRGNNSFIVWDPQAFSISLLPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRKKTTQPQPPQQVLDPCVELGRFGLDGEVDRLRRDKQVLMVELVKLRQQQQNTRNYLQSMEGRLKKTEQKQQQIMNFLARAMQNPNFLQQLVQKKELRKELEEAFSKKRRRPIDQGPSNVEVAESGYAEECSGMVKLEQQEYTDMSELEVSDLELAMNMGEQSGSQKNLEEKGVEIESRNKDIDEMFWEDFLNEGDEEDLLGFKEDGKYINNVLAEELCYLASSSPK.	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g04242	346	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	18	261	IPR027725	-
	Seca8g04242	346	FunFam	Heat shock transcription factor 1	25	122	-	-
	Seca8g04242	346	SMART	hsfneu3	28	121	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca8g04242	346	SUPERFAMILY	"Winged helix" DNA-binding domain	27	121	IPR036390	-
	Seca8g04242	346	Gene3D	-	24	122	IPR036388	-
	Seca8g04242	346	Coils	Coil	210	230	-	-
	Seca8g04242	346	ProSitePatterns	HSF-type DNA-binding domain signature.	71	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca8g04242	346	Coils	Coil	148	168	-	-
	Seca8g04242	346	MobiDBLite	consensus disorder prediction	1	28	-	-
	Seca8g04242	346	Pfam	HSF-type DNA-binding	32	121	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca8g04242	346	PRINTS	Heat shock factor (HSF) domain signature	83	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca8g04242	346	PRINTS	Heat shock factor (HSF) domain signature	32	55	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca8g04242	346	PRINTS	Heat shock factor (HSF) domain signature	70	82	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g04242	Seca-Chr8	120493642	120495688	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g04242	16	344	HSF	AT3G22830	60.221	1.19e-138	398

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Seca8g04242		HSF_DNA-bind	2.5e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g04242	K09419		-	qsu:112016413	459.914