Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04232 ATGCCAGTGAGGCAAATGAAGGAGAGTTCAGAGCAACACCTTGTGATAAAAACCCATTTGCAGAACCCCATGAATCCAGCTAAGAAGGTTACTAGGGCTGTCCAAAATGGCAAAGGTCCACCACCACTGCCACAAGAACCCCATAACCAAACTTCACCTCAAGCAAGGACCAGGGGAAGAAGAAGGAGCAAAGTTGGCAGAAAATATGATCAAGGAGATGTTTTGATGACACCCAGTTGCCGACCCTGCACTGTTGTGACAAATTCTGCAAATGGGCCTGTTGAAAATGGAAGCATCTCTGGTGACATAGAAATGGGTTATCCTACTTCAAGCAAGTCTTTGAGCCTTGCTCTTAGGCCAGGATATGGACAAGTTGGAACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCATTATGATGTCACTATTACACCTGAAGTGTCTTCCAAAGCAGTAAACAGATCCATCATAGCAGAACTTGTGAGGCTCTATAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAGAAATCTGTACACAGCAGGGGCACTTCCCTTTTCATGGAGAGAGTTTAAGATTAAGCTTTTAGAGGAAGAGGATGGAGTTAATGGCCCCAAGAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTCTTTCACGGGCTAACTTGCATCACTTGGGGCAGTTTCTAGCTGGTAAGCGTGCTGATGCTCCACAGGAGACACTCCAAATTCTTGACACCGTACTAAGAGAGCTATCATTATCATCTAAGAGGTTTTGCCCCATTGGGAGATCCTTCTTTTCACCTGATATTAAAACACCACAAAGGCTTGGAGAGGGATTGGAGTCTTGGCGTGGATTTTACCAGAGCATAAGACCTACTCAGATGGGCCTTTCTCTCAATATTGATATGGCTTCTGCTACGTTCATTGAACCTCTTCCAGTAGTGGAATTTGTTGGCCAGCTATTAGGAAAAGATGTGCTATCAAGGCAATTGTCCGATGCTGATCGTATTAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGGAGTGTTAGAAGAAAATATCGTGTTTCGGGTTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAATTCAACTATGAAGTCAGTGGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTAAATATACTCACCTTCCTTGCCTTCAAGTAGGAAATCAAAAGAAAGCTAACTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGACAACGTTATACTAAAAGGTTGAATGAGAAGCAAATTACCGCACTCCTGAAAGTTACTTGCCAGAGACCTCGTGATCGAGAAAATGACATTTTGCGGACCATTCAGCATAATGCTTTTGATCAAGATCCATATGCAAAGGAATTTGGGATTAAAGTCAGTGAAAAGCTAGCTTCTGTGGAAGCTCGAATTCTTCCTGCCCCTTGGCTTAAATATCATGAAAGTGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAACCGATGGGCGTGCATAAATTTTTCACGAAGCGTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCTCCATCTACAATGCCAAACCTGAGCAGGTAGAGAAGGCTTTGAAGCATGTTTACCATGTGTCAACAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGCAATATTGCCTGACAACAATGGTTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGAACTTGGTCTAATTTCTCAATGTTGCCTGACAAAGCATGTCTTTAAGATCACTAAGCAGTATTTGGCTAACGTGTCTTTGAAGATCAATGTCAAGATGGGAGGTAGAAATACTGTTCTTGTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTTACCCATCCTGAAAATGGAGAAGAATCTAGCCCCTCAATAGCAGCTGTAGTAGCATCCCAAGATTGGCCTGAAGTAACGAAATATGCAGGATTAGTTTGTGCTCAAGCTCATAGACAGGAACTTATACAGGATTTGTACAAAACTTGGCATGACCCTGTCCGTGGCTTAGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCTTTTAGAAAAGCAACAGGACAGAAGCCACTGAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTATATGAGTTGGATGCAATTCGGAAGGCATGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACATCATACTCGGTTATTCGCAAACAACCACAGGGACAGGAACACTACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTTGATTCCAAAATCTGTCACCCAACAGAGTTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGTAGAAGATAGTACTCTCTCGTGTACCGGGCTTTTTAAATTATGA 2667 0.4162 MPVRQMKESSEQHLVIKTHLQNPMNPAKKVTRAVQNGKGPPPLPQEPHNQTSPQARTRGRRRSKVGRKYDQGDVLMTPSCRPCTVVTNSANGPVENGSISGDIEMGYPTSSKSLSLALRPGYGQVGTKCIVKANHFFAELPDKDLNHYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRRNLYTAGALPFSWREFKIKLLEEEDGVNGPKREREYKVVIKFLSRANLHHLGQFLAGKRADAPQETLQILDTVLRELSLSSKRFCPIGRSFFSPDIKTPQRLGEGLESWRGFYQSIRPTQMGLSLNIDMASATFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAFDQDPYAKEFGIKVSEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVISIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGLVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNTTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVEDSTLSCTGLFKL. 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04232 888 Pfam Argonaute linker 2 domain 466 512 IPR032472 -
Seca8g04232 888 ProSiteProfiles PAZ domain profile. 326 440 IPR003100 GO:0005515
Seca8g04232 888 CDD Piwi_ago-like 484 874 IPR045246 -
Seca8g04232 888 FunFam Argonaute 10 504 677 - -
Seca8g04232 888 SUPERFAMILY PAZ domain 320 479 IPR036085 GO:0005515
Seca8g04232 888 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 104 874 - -
Seca8g04232 888 SUPERFAMILY Ribonuclease H-like 606 874 IPR012337 -
Seca8g04232 888 SMART Piwi_a_2 614 887 IPR003165 GO:0003676
Seca8g04232 888 Gene3D paz domain 320 444 - -
Seca8g04232 888 SMART DUF1785_2 273 325 IPR014811 -
Seca8g04232 888 FunFam Protein argonaute-2 319 445 - -
Seca8g04232 888 Pfam PAZ domain 349 456 IPR003100 GO:0005515
Seca8g04232 888 Pfam Piwi domain 615 875 IPR003165 GO:0003676
Seca8g04232 888 ProSiteProfiles Piwi domain profile. 614 888 IPR003165 GO:0003676
Seca8g04232 888 MobiDBLite consensus disorder prediction 18 68 - -
Seca8g04232 888 Gene3D - 683 886 IPR036397 GO:0003676
Seca8g04232 888 Pfam Mid domain of argonaute 523 600 IPR032473 -
Seca8g04232 888 CDD PAZ_argonaute_like 325 439 - -
Seca8g04232 888 Gene3D - 504 677 - -
Seca8g04232 888 SMART PAZ_2_a_3 330 462 IPR003100 GO:0005515
Seca8g04232 888 Pfam N-terminal domain of argonaute 128 262 IPR032474 -
Seca8g04232 888 Pfam Argonaute linker 1 domain 274 323 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04232 Seca-Chr8 120282337 120291885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04232 1 874 Eukaryotic Initiation Factors Gene Family AT5G43810 80.894 0.0 1465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04232 K11593 - gmx:100816999 1607.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04232 8 120282337 120291885 Seca8g04232 8 120282337 120291885 ECH