Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04231 ATGGATTCACTGCCACCTCCACCAAAGACAATTCCCCCAAATGTTGTTCCTCTGAACGCAGAATCAGCAAAAATGTTGGAGCCAATGAAAAAGACATGTGATACAAAACGTTTGCCTGTGGCTAGGAGAGATGGCCACCCGGTTGAAGGTCTTGGGAGAAAGGTCATTGATAAACTTTGTGAAACATATGGTGTGTTGCAAAACAAGAACTTTTCATATGATGGTGAAAAAAGCTTATTCACTGTTGGTTCTCTACCACTTAATAAGGAGGAGTTTGAAGTTGTGTTAGAGGAAGTTTCACCAAGGAGGGTTGGAAGGAATGAGAGCCCTGACAACACAAATGATGGAGACTCCAAGAGAATGAGGCGTCAATCTCAGTCTAAAATTGTTAAGGTGGAGATCAGTTATGCAGCCAAAAGTCCAACGCAAGCTATTGAAAATGCTTTAAGTGGTCAGCATTCTGATCAATTCCAAGAAGCATTGAGGGTTCTGGACATTATACTTAGGCAGCATGCAGCAAAGCAGGGATGTCTACTTGTTCGCCAATCCTTCTTTCATGACAATCCAAGGAATTATACTGATATTGGAGGTGGTGTTCAAGGTTGTCGTGGTTTCCATTCAAGCTTCCGAGCTACACAAGGGGGGTTTATCTCTCAATATGTGTCAAATACAATGGTTGTAAAGCCTGGTCCTGTGCTGGACTTCCTTCTCCAGAATCAGAATGTTCAACAACCAAACTTAATTGATTGGGCCAAGGCAAAAAGAATGCTGAAAAGCCTCAGAATTAAGGCAAATAATATTGAGTACAAAATCACTGGATTGAGTGAGAAGCCCTGCAGGACACAGTCATTTTTATTAAAACATGGAAGGGATGCCAATGGTGAAGTGCAGTCAAGTGAGATCACAGTTTATGATTACTTTAAACGCCATAAAAAGATTGAATTGCGCTATTCTGCTGATTTTCCATGCATCAATGTTGGCAAACCAAAGCGTCCCTCTTATTTTCCTGTAGAGTCCTTAAGAAACAGCAGATATGGTAATTATCCTATGCTTCGGTCTTCTGGGATTAACATTGAACCTAACTTTATTCGAGTTGATGGACGTGTTCTGCAAGCTCCAAGGCTTGTAGTTGGACAGGGAGAGAACTTTTTTCCACGGAATGGGCACTGGAATTTCAACAATAAGAAACTAGTTGAACCTGGCAAGATAGAGCTCTGGGCCATTGTAAACTTTTCAGCTCGGTGGCATGAATTCCTCTCTGTTAACGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCTCGTTATAGAGCTGCAGTTCCTACTCAGTCATCCAAAGTTGAGATGATTGCATCTCTATTTAAGCCTGTTTCTGATACCGAGGATGAGGGTATCATCAGGGAGCTGCTTATGGACTTTTACATAACTTCAGGGAAAAGGAAGCCTGAGAATATAATAATTTTCAGGCACTGTCATTGA 1476 0.4153 MDSLPPPPKTIPPNVVPLNAESAKMLEPMKKTCDTKRLPVARRDGHPVEGLGRKVIDKLCETYGVLQNKNFSYDGEKSLFTVGSLPLNKEEFEVVLEEVSPRRVGRNESPDNTNDGDSKRMRRQSQSKIVKVEISYAAKSPTQAIENALSGQHSDQFQEALRVLDIILRQHAAKQGCLLVRQSFFHDNPRNYTDIGGGVQGCRGFHSSFRATQGGFISQYVSNTMVVKPGPVLDFLLQNQNVQQPNLIDWAKAKRMLKSLRIKANNIEYKITGLSEKPCRTQSFLLKHGRDANGEVQSSEITVYDYFKRHKKIELRYSADFPCINVGKPKRPSYFPVESLRNSRYGNYPMLRSSGINIEPNFIRVDGRVLQAPRLVVGQGENFFPRNGHWNFNNKKLVEPGKIELWAIVNFSARWHEFLSVNVVSSRCWPQISRYRAAVPTQSSKVEMIASLFKPVSDTEDEGIIRELLMDFYITSGKRKPENIIIFRHCH. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04231 491 Gene3D paz domain 223 342 - -
Seca8g04231 491 Pfam Argonaute linker 1 domain 180 224 IPR014811 -
Seca8g04231 491 CDD PAZ_argonaute_like 229 338 - -
Seca8g04231 491 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 341 415 - -
Seca8g04231 491 Pfam PAZ domain 233 341 IPR003100 GO:0005515
Seca8g04231 491 Gene3D - 369 459 - -
Seca8g04231 491 SMART DUF1785_2 178 229 IPR014811 -
Seca8g04231 491 Pfam Argonaute linker 2 domain 340 375 IPR032472 -
Seca8g04231 491 SUPERFAMILY PAZ domain 224 340 IPR036085 GO:0005515
Seca8g04231 491 MobiDBLite consensus disorder prediction 99 126 - -
Seca8g04231 491 Pfam N-terminal domain of argonaute 49 168 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04231 Seca-Chr8 120213342 120217104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04231 423 488 Eukaryotic Initiation Factors Gene Family AT5G43810 38.571 4.59e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04231 K11593 - vvi:100241029 488.804