Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04217 ATGGTTGGATTGGAACTCATACCTGTGGGTACAATTTTGGCTGTTCTAACTAGCCAGGTGGTGAGAACAGCTAATGCAGCAATGGATGTTCTTGTTGATAAAGAAAGTTTCAAGGTCCTTTCAAAACACCTGCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAAGCTGCAAGGGTTGCCCTGGAGTCTCTTGAATCAGATGTCAAAAAGGCGAGTAATTTGGTTGAGAAGTACAGGAACCGTGGCCGTTTTTACTTACTGATGAAGTGCAGATACATAGTCAAGGAGGTTGAGCAAGTCACAAGGGATATTGGAAGGTCTCTGGCTGCACTGTCTATTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAACAGATTACAGAGTGAGATGCAAAGGGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTATTGACAAGCTGAACCATGGAATTAAGGAGCAGAAACTAGATCAGGCTTTTGCAAATGACATGCTTGAGGAAATAGCAATGGCAGTTGGGGTGCCAGTGGAACCTTCAGAGATAAGCAAAGAGCTTGCCAGCATTAGGTGGGAAAAAGAAGAAGCTGCCAACAGGAAAGAATTATCTGAATTTATTTTTCTGGAGCAGATCATTGAGCTACTCTCTCGAGCTGATGCTGCTAGAGATTATGAGGAAGTTAAGAAGCAATACTTTGAAAGGGTTCAGGTAATAGAGCGATATGGTTCAAAGGAAAATTATATTCCACCACTTAATTCTTTCCTTTGTTGCATAACTGGAGCTGTCATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCCATTGAAGCCTGGTTTGTTGATGGCAAGAGGACTGACCCTGAAACAGAAGAGGTTCTTGAAGATACTACCTTGAGGTCAAACATTCGATTAAGAGAATCTATTATAGAGTGGAGAGAACTTAATTACTGCTTTGAAATAAAGTCTGTCAGGGAAAACCTATCAACCAGTTCTAACGTATTATTGCAAGAATCCCTTAGCCAAATACAGGCTCTCATAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATTGGAGGGCTTACTGATATTATTATCACTATCCTTGGGAACTCTGTCTCCAGAGATGTGAAGATGAAGATCTTGATTACTTTGAAGGATGCTGTAGAGGGACATGCAAGAAACAAGGAAAAAGTGGTTGAGTCTCAAGGGTGGGGTCACATTATTTCCTGCTTACAAAGTGACTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTGCTTCAAGACCGATCTGGCTGGAATAAAAGCTTCTGCAAAAAACTCTCTGAGCATCCCAGTGCAGTTCTTTACCTTGTTAGCCTTCTAAAGGATCCTGTCAGCATTTCAACTGGGATTGCAGAAAAGATTTTGATGGAGCTTATTGAAATAGATGAGGAAAATATTTGCAGTACCGCTAAGTTTGGCTGGTACAAACCTCTTGCTGATCGAATGATTCAAGGATTGGAGTCTTCAAGAATGTCAATGGCAAAAGTCATAGTTAATTTGGAATTGAAGGATTTAAACTTGAAACTCCTTGGTGAGCAAGGAGTTATACCTCCTTTGCTAGAAATGCTATCTAGCAGCATTGAATCAAAAGAATTGTCATTATCAGCCCTGGTTAAACTAGCAGGATTTCATGCCAATAAGGGGATTATTGCTGCATCTGGAGGCGTACCTCTTGTTCTAGATTTAATGTTCTCTCGCAGGACTCGGTCATTCATTACCATTAAATGTTGTGAAATCCTTGAGAAGCTTTCTTCTGATGATGATGGAATAGATTTCTTTGTTGATGGAGAAGGTAATCAACTCGAGTTAGATAGCATTATTACCAATTTGTTAGCTCTGCAGCAGAGTCCTAACTCAGCTCACAACTTCCGTAAGCCTGCATTACGCACTCTTCTTGGCATTTGCAAGTTTGAGACTGGTTTAGTTAAGAAGGCAGTTCTGGCAGCCAATGGTGTATCTCTAATCCTTCCCCTTCTTGATGATTCTGACTCAGAAATCAGGGAGATTGCCATAAATCTTCTGTTTCTTTTCTCTCAACATGAACCAGAAGGAGTAGTTGAATACCTCTTCAGGCCCAGAAGACTGGAAGCTTTAATTGGTTTCCTTGAGAATGATGATAATAATGATGTACAAAGGGCTGCTGCAGGTTTACTAGCTAACCTTCCTAAATCAGAACGAGAACTCACTATGAAGTTGATTGACTTGGGTGGCCTTGATGCAATCATAAGCATTTTGAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGATCCCACAAATATAGAGTCACAGCGTGATTTGGTTAAACGAGGAATATATCCTTTGCTTGTAAATTTTCTCAATACTGGTTCAGTAACAGCAAAAGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGTACTCCAAAGCTCACAGTTGTTTCCAAATCAACTGGTTGCTGCTGGTGGTTTAGATCATCACGAGTTCCTTTATGTTCAGCACATGGGAGTGTATGCAATGTGACTTCAACATTTTGTCTGTTGGAAGCAAATGCTTTGCCTGGTTTGATAAAGCTATTACAGGAGGAGGTTCATGCAACTGCTTATGAAGCCATACAAACACTTTCCACCTTGGTTTTGGAAGACTATCCTCAAAGAGGAGCTCGTGTATTGCATGAGTCAAATGCAATGAGACCCCTATTGGAAATTTTGAATTGGGGAACTGATTCTCTCAAGGCAGAAGCTCTAGGACTCTTGGAGAAGGTCTTTGTCTCAAAGGAAATGGTTGAATACTATGGAATAACAGCTAGATTACGTCTAGTTGGTCTGAATGGCATGAATATACACGGGGATGGTCACTTAAGGAGAAAAGCTGCCAGGGTACTGTCATTGCTTGAACGCTATTCAAAGTCATCGTCATCTGCAATATCTGGAGTTCTGGAGTGA 3054 0.407 MVGLELIPVGTILAVLTSQVVRTANAAMDVLVDKESFKVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKKASNLVEKYRNRGRFYLLMKCRYIVKEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQSEMQRVEFEASQSQLQIIDKLNHGIKEQKLDQAFANDMLEEIAMAVGVPVEPSEISKELASIRWEKEEAANRKELSEFIFLEQIIELLSRADAARDYEEVKKQYFERVQVIERYGSKENYIPPLNSFLCCITGAVMVDPVSLCTGTTCERSAIEAWFVDGKRTDPETEEVLEDTTLRSNIRLRESIIEWRELNYCFEIKSVRENLSTSSNVLLQESLSQIQALIRENSINKDWISIGGLTDIIITILGNSVSRDVKMKILITLKDAVEGHARNKEKVVESQGWGHIISCLQSDSRISKEAIDLLYELLQDRSGWNKSFCKKLSEHPSAVLYLVSLLKDPVSISTGIAEKILMELIEIDEENICSTAKFGWYKPLADRMIQGLESSRMSMAKVIVNLELKDLNLKLLGEQGVIPPLLEMLSSSIESKELSLSALVKLAGFHANKGIIAASGGVPLVLDLMFSRRTRSFITIKCCEILEKLSSDDDGIDFFVDGEGNQLELDSIITNLLALQQSPNSAHNFRKPALRTLLGICKFETGLVKKAVLAANGVSLILPLLDDSDSEIREIAINLLFLFSQHEPEGVVEYLFRPRRLEALIGFLENDDNNDVQRAAAGLLANLPKSERELTMKLIDLGGLDAIISILKNGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVVSKSTGCCWWFRSSRVPLCSAHGSVCNVTSTFCLLEANALPGLIKLLQEEVHATAYEAIQTLSTLVLEDYPQRGARVLHESNAMRPLLEILNWGTDSLKAEALGLLEKVFVSKEMVEYYGITARLRLVGLNGMNIHGDGHLRRKAARVLSLLERYSKSSSSAISGVLE. 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04217 1017 Coils Coil 69 89 - -
Seca8g04217 1017 SUPERFAMILY ARM repeat 343 716 IPR016024 -
Seca8g04217 1017 Gene3D - 861 1013 IPR011989 -
Seca8g04217 1017 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1009 - -
Seca8g04217 1017 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 755 IPR000225 GO:0005515
Seca8g04217 1017 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Seca8g04217 1017 Gene3D - 9 123 IPR036537 GO:0007166
Seca8g04217 1017 SUPERFAMILY RING/U-box 248 329 - -
Seca8g04217 1017 CDD MLKL_NTD 25 145 - -
Seca8g04217 1017 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Seca8g04217 1017 SMART arm_5 759 799 IPR000225 GO:0005515
Seca8g04217 1017 SMART arm_5 673 713 IPR000225 GO:0005515
Seca8g04217 1017 SMART arm_5 920 960 IPR000225 GO:0005515
Seca8g04217 1017 SMART arm_5 802 842 IPR000225 GO:0005515
Seca8g04217 1017 SMART arm_5 408 447 IPR000225 GO:0005515
Seca8g04217 1017 SMART arm_5 577 619 IPR000225 GO:0005515
Seca8g04217 1017 SMART arm_5 537 576 IPR000225 GO:0005515
Seca8g04217 1017 SMART arm_5 715 757 IPR000225 GO:0005515
Seca8g04217 1017 SMART arm_5 876 916 IPR000225 GO:0005515
Seca8g04217 1017 SUPERFAMILY ARM repeat 638 968 IPR016024 -
Seca8g04217 1017 Coils Coil 127 154 - -
Seca8g04217 1017 CDD RING-Ubox_PUB 265 314 IPR045210 -
Seca8g04217 1017 Gene3D - 490 853 IPR011989 -
Seca8g04217 1017 Gene3D - 338 489 IPR011989 -
Seca8g04217 1017 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 337 IPR013083 -
Seca8g04217 1017 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04217 Seca-Chr8 119898352 119902918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04217 264 974 U-box Gene Family AT1G76390 27.201 3.64e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04217 - - gsj:114377374 1665.97