Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04213 ATGGAACGACGGCAACCATCGCCGTCGCCGTCGCCGCCGCCATCCCCACCGGCGCGCACTATCCTTGGGAAGTACCAACTAACACGGTTCCTAGGGCGCGGGAACTTTGCGAAAGTGTACCAGGCAGTGTCCCTGACGGACGGCACCACGGTGGCCGTGAAAATGATCGACAAGTCCAAAACAGTTGACGCTGCAATGGAGCCGAGAATCGTGCGAGAAATCGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTCAAAATCCATGAGGTAATGGCCACCAAAACCAAGATCTACCTCATCGTCGACTACGCCGGCGGCGGCGAGCTCTTCTCCAAGATCTTCCGCCGAGGCCGTTTGCCGGAGAACGTCGCACGCCGCTACTTCCAGCAGCTCGTCTCCGCCCTCTGCTTCTGCCACCGGAACGGCGTCGCACACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGCCGACGGCAACCTCAAGGTCTCCGACTTCGGTCTCTCCGCGTTGCCGGAGCATCTCAAAAACGGCCTGCTCCACACGGCTTGCGGCACACCGGCGTACACCGCACCGGAGATCCTCCGCCGGATCGGGTACGACGGTTCCGTCGCCGACGCGTGGTCGTGCGGCGTCATACTCTACGTGTTGCTCGCCGGTCACCTTCCATTCGACGATTCCAACATTCCGGCGATGTGCAAGAGGATCTCCCGGCGGGATTACCAGTTCCCGGCGTGGGTTTCTCGACCGGCGCGGAACCTGATCTACCAACTACTCGACCCGAACCCGAAAACCCGAATGAGGTTGGAGGCTGTGGTGGAAAATTCGTGGTACAAGAAATCCCTAAAAGAAGCAGCAGAAGAGAGCGTGTTCGAATCGGATTTGTATAACAAGTGTTGCGGAGACGGTTACAAATTGGGAATGAATGCGTTTGATATAATATCGATGTCTTCGGGGCTTGACTTGAGAGGGTTGTTCGAAACGACGTCGGAAAACAGGAGAGAGAAGAGGTTCACATCGAATAAGGATGTGGAGGTGATTGAGGAGAAGGTGAAGGAGGTTGGTGGGAGTTTGGGGTTTAGGGTTGAGATTGGGAAGAATGGGACCATTGGGTTGGGGAAAGGGAAGGTGGCAATAGTGGTTGAGGTGTTTCAGATTGTGCCTCAATTGTTGTTAGTGGCACTGAAACTAGTGGATGGTGGGTTGGAGTTTGAGAACCTTCATTGGAATGATTGGAAAATTGGTCTTCAAGATGTTGTTCTCTCTTGGCATAATAATAATGAAGCACCCCTCTCTATGTGA 1308 0.5535 MERRQPSPSPSPPPSPPARTILGKYQLTRFLGRGNFAKVYQAVSLTDGTTVAVKMIDKSKTVDAAMEPRIVREIDAMRRLHHHPNILKIHEVMATKTKIYLIVDYAGGGELFSKIFRRGRLPENVARRYFQQLVSALCFCHRNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEHLKNGLLHTACGTPAYTAPEILRRIGYDGSVADAWSCGVILYVLLAGHLPFDDSNIPAMCKRISRRDYQFPAWVSRPARNLIYQLLDPNPKTRMRLEAVVENSWYKKSLKEAAEESVFESDLYNKCCGDGYKLGMNAFDIISMSSGLDLRGLFETTSENRREKRFTSNKDVEVIEEKVKEVGGSLGFRVEIGKNGTIGLGKGKVAIVVEVFQIVPQLLLVALKLVDGGLEFENLHWNDWKIGLQDVVLSWHNNNEAPLSM. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04213 435 Pfam NAF domain 310 365 IPR004041 GO:0007165
Seca8g04213 435 SUPERFAMILY Protein kinase-like (PK-like) 21 285 IPR011009 -
Seca8g04213 435 Gene3D Transferase(Phosphotransferase) domain 1 17 312 - -
Seca8g04213 435 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Seca8g04213 435 FunFam Non-specific serine/threonine protein kinase 16 305 - -
Seca8g04213 435 CDD CIPK_C 311 419 - -
Seca8g04213 435 FunFam Non-specific serine/threonine protein kinase 308 423 - -
Seca8g04213 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 398 - -
Seca8g04213 435 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Seca8g04213 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Seca8g04213 435 FunFam Non-specific serine/threonine protein kinase 18 110 - -
Seca8g04213 435 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04213 435 Gene3D Kinase associated domain 1, KA1 313 423 - -
Seca8g04213 435 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04213 435 SMART serkin_6 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04213 Seca-Chr8 119804873 119806180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04213 6 428 Miscellaneous Gene Families AT3G23000 57.541 3.86e-175 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca8g04213 Pkinase 4.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04213 K12761 - gmx:100305372 687.567