Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04208 ATGACAACAAGCTGCATCAAACCCCATCATCCCTTATATGCTTCTCTCTTGCTGCTATTACTCTTCCCTTTCCTTCTTGATGCTCAGACTCCAAGACAAGAAAACAACACAGGTTTCACCTGCACGGCCACTGATCAAAACAGGTATCCATGTCAAGCCTATGCTTTCTACAGAGCTTCAAGCCCAAATTTTCTTGACCTTGCTTCCATAGCTGACCTTTTCTCTGTTAGCCGCCTCATGATCTCAAACCCCAGCAACATATCAAACCCTTCTTCTCCTTTAGTCCCTAATCAACCCCTTTTTATTCCCTTAACTTGCTCTTGCAACAGGGTCAACACCACCTTTGGTTCACTCTCTTATGCCAACATCTCCTACACCATCAAACCAAATGACACCTACTTCATTGTATCCACCTTCATGTTTCAGAATCTCACTACTTACCCTTCTGTGGAGGTTGTGAACCCAACTCTTGTAGCTACTAACCTATCAATTGGTGTTAATGTTATATTCCCTGTCTTCTGCATGTGTCCCAATAGAACCACTCAGGATTCAGCTAATTATATGATCTCCTATGTTGTTCAACCCTCTGATAACATATCATCCATTGCTTCAAGTTTTGGATCAAGGGAACAGTCTATAATTGATGTGAATGGTGATACTCTTCATGATTATGATACCATCTTTGTTCCTGTGACAAGGTTGCCTGTTCTGTCACAGCCAACTGTTGTTCCTTCTGCTCCTCCTCCTGGAAATGGGACTGGAAGTGGAAGTGGAAGTGGAAGTGGAAGCTCTGATGATAGGACTGGGACTGTTAGAGGGTTGGCCATTGGGCTTGGAATTGTTGGGTTGTTGTTGATTTTGGTGATTGGGTTGTGGGTTTATAGGGAGGTTGTGTTCAAGGATAGGTTGTGGATGGTCAAAGATGAGGAACAACAGAGGCAGAGAAACTTGTATTTGGGAGGGAAAGGGAGCAAAGAGAACAAGGAAATGGATGTCAAGTTGATGGCTAATGTATCAGATTGCTTAGACAAGTACAGGGTTTTTGGAATTGAAGAATTGATTGAAGCCACTGATGGGTTTAGTGAAAATTGCTTGATTCAAGGGTCTGTTTACAAAGGCTCAATTGATGGGGAGGTCTATGCAATCAAGAAGATGAAGTGGAATGCCTATGAGGAGCTCAAGATCTTACAGAAGGTAAACCATGGGAATTTGGTGAAGTTGGAGGGATTTTGCATAGACCAAGAAGAAGCAAATTGCTATCTAATCTATGAATATGTGGAGAATGGATCTCTCTACTCATGGTTGCATGAGGACAGAAAGGAAAAGCTGAACTGGAAAACAAGGCTGAGAATAGCCATTGATATTGCCAATGGTCTCCAATACATCCATGAGCACACAAGGCCACGAGTTGTGCACAAAGACATAAAGAGCAGCAACATTCTCTTGGACTTCAACATGAGAGCCAAAATTGCCAACTTTGGGCTTGCAAAATCAGGAATGAATGCCATTACAATGCACATTGTGGGAACACAAGGCTATATTGCCCCTGAATATCTAGCTGATGGTGTGGTCTCAACAAAGATGGATGTGTTTGCTTTTGGGGTTCTTTTGCTTGAACTAATTTCAGGGAAAGAAGCCATTGATGAGGAGGGAAATCTCTTGTCAGCAAGTGCCATAAAAATCTTTGAAGTGAAAAGTGAGCAAGAGAAGGCTAGGAGATTGAAGGAATGGTTGGATAAGGCAATTTTAAAGGAAACATGCTCAATGGAAGGTTTGATGGGTGTTCTCAATGTTGCACTTTCTTGTTTGAATAGAGACCCATCAAAGAGGCCCAGCATAGTGGATATTGCCTATGCACTAAGTAAAAGTGAAGATGCAGGTTTTGACATGTCAGATGAAGGGATTGGTTCACCAAGGTTGATAGCTAGGTGA 1932 0.4229 MTTSCIKPHHPLYASLLLLLLFPFLLDAQTPRQENNTGFTCTATDQNRYPCQAYAFYRASSPNFLDLASIADLFSVSRLMISNPSNISNPSSPLVPNQPLFIPLTCSCNRVNTTFGSLSYANISYTIKPNDTYFIVSTFMFQNLTTYPSVEVVNPTLVATNLSIGVNVIFPVFCMCPNRTTQDSANYMISYVVQPSDNISSIASSFGSREQSIIDVNGDTLHDYDTIFVPVTRLPVLSQPTVVPSAPPPGNGTGSGSGSGSGSSDDRTGTVRGLAIGLGIVGLLLILVIGLWVYREVVFKDRLWMVKDEEQQRQRNLYLGGKGSKENKEMDVKLMANVSDCLDKYRVFGIEELIEATDGFSENCLIQGSVYKGSIDGEVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDQEEANCYLIYEYVENGSLYSWLHEDRKEKLNWKTRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDFNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFAFGVLLLELISGKEAIDEEGNLLSASAIKIFEVKSEQEKARRLKEWLDKAILKETCSMEGLMGVLNVALSCLNRDPSKRPSIVDIAYALSKSEDAGFDMSDEGIGSPRLIAR. 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04208 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Seca8g04208 643 Gene3D Phosphorylase Kinase; domain 1 329 425 - -
Seca8g04208 643 ProSiteProfiles LysM domain profile. 189 236 IPR018392 -
Seca8g04208 643 CDD LysM 189 229 IPR018392 -
Seca8g04208 643 MobiDBLite consensus disorder prediction 240 266 - -
Seca8g04208 643 ProSiteProfiles Protein kinase domain profile. 342 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04208 643 Pfam LysM domain 191 229 IPR018392 -
Seca8g04208 643 Gene3D Transferase(Phosphotransferase) domain 1 426 633 - -
Seca8g04208 643 SMART serkin_6 360 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04208 643 Pfam Protein kinase domain 369 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04208 643 MobiDBLite consensus disorder prediction 248 266 - -
Seca8g04208 643 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 17 622 - -
Seca8g04208 643 FunFam PTI1-like tyrosine-protein kinase 3 426 632 - -
Seca8g04208 643 SUPERFAMILY Protein kinase-like (PK-like) 345 619 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04208 Seca-Chr8 119723203 119726636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04208 38 622 Receptor kinase-like Gene Family AT2G23770 33.950 2.19e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca8g04208 Pkinase 3.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04208 - - lang:109352405 933.71