Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04206 ATGGAAAAGACAGTGGCATATGAGAATGATCTCAACCTCAAGGCAACAGAACTTAGATTGGGGTTGCCAGGGACTGAGGAAAAGGAGGAGAAAGCCATGGCTGGTGTGAAAAGCAACAAAAGGCAATTGCCTGAAACTTCTGAAGAGTCTGTTTCCATTTCCAAGGCCTCACATGACCAACAAGTTGAGAGTGATGCAGCCCCTCCTGCCAAACATGGCAGGGCAAAGATAGTGGGATGGCCACCAATCAGATCCTACAGGAAAAACAGCTTGCAAGAAGCTGAGGGTTCTGGGATCTATGTGAAAGTGAGCATGGATGGTGCTCCTTACCTCAGGAAGATTGACTTGAAGGTCTATAGGGGCTATCCAGAACTACTCAAAGCTCTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGCACAGAAGCTAGAGGATTGGGTTGTGGTGTATGA 588 0.4575 MEKTVAYENDLNLKATELRLGLPGTEEKEEKAMAGVKSNKRQLPETSEESVSISKASHDQQVESDAAPPAKHGRAKIVGWPPIRSYRKNSLQEAEGSGIYVKVSMDGAPYLRKIDLKVYRGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGTEARGLGCGV. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04206 195 MobiDBLite consensus disorder prediction 21 36 - -
Seca8g04206 195 MobiDBLite consensus disorder prediction 21 74 - -
Seca8g04206 195 MobiDBLite consensus disorder prediction 45 61 - -
Seca8g04206 195 Pfam AUX/IAA family 39 192 IPR033389 -
Seca8g04206 195 FunFam Auxin-responsive protein 93 195 - -
Seca8g04206 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 189 IPR003311 GO:0005634|GO:0006355
Seca8g04206 195 SUPERFAMILY CAD & PB1 domains 88 184 - -
Seca8g04206 195 Gene3D - 92 195 - -
Seca8g04206 195 ProSiteProfiles PB1 domain profile. 98 185 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04206 Seca-Chr8 119693783 119695322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04206 101 191 B3 DNA Binding Superfamily AT2G46530 38.462 5.91e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca8g04206 AUX_IAA 6.4e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04206 K14484 - gmx:100800212 330.872