Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04200 ATGGATCGCTTTTTTCCTGAAAAGCTTCTGGGTGAGATTTTTTGGGATGAACCTCTTTCAGCTACAAATCAAAGTGATTTTGTTCAGGATTCCCAGATCACGAGAGCTGAACATTGTCCTCCCCCAACTCAAAGCGCTTTTGTTCAATATAGAAACCTACCCACAATTAAGTTTGGGGAAGAAAGTTCTCTAAACGGATCAAATTCCCAGGCCATGAGTAAAAGAATGCTAGCATTCTTAAGAAAAAATAAGCCTGTTGTAGAGAAAGATAACGTAGCAGAGCATGAAAGAGAACGTTGTTTCAGGCACATGATTAATGAAAGAACGCGGAGGCAGAGGCAGAGGCAATATTGCTTGAACCTGCATTCAATGTTACCTCATGGATCAAAAACAGATAATAATTCTGTAGTTCAAATGGCAGCGAAGGAGATTCAACGGCTACAGGGATGCAAAGAGGAGTTACAGAGGAAAAATTGTGTGCTTGAAGCGAATCTTGAAGCGGTTAAGAGCAACAAAATTGGTGGAAGCAGAGTTCAATATTTAAGAGTGCCATATCCTACATCTGGAATTGATTCTATTATTGAGACCCTTAAATGTTTGAAAGGCCTTGGAGTGGATACCAGAAGAATCAAATCAAAATTTTCCCCACAGGAGTTGTTTGCAGTGTTGGAGATAGAAACCGAGAAGATTGCAGATACTGACGTGGAAAGGGCTATTCAGAGAACACTTGATGAGCTTGAGTGGAAGCTTCATTCTCATGTCCTGGAAGGTTCTGAAAGACAAAGATTAGAATATGAAGAGTCAGACCGAATTTTTTAG 819 0.4017 MDRFFPEKLLGEIFWDEPLSATNQSDFVQDSQITRAEHCPPPTQSAFVQYRNLPTIKFGEESSLNGSNSQAMSKRMLAFLRKNKPVVEKDNVAEHERERCFRHMINERTRRQRQRQYCLNLHSMLPHGSKTDNNSVVQMAAKEIQRLQGCKEELQRKNCVLEANLEAVKSNKIGGSRVQYLRVPYPTSGIDSIIETLKCLKGLGVDTRRIKSKFSPQELFAVLEIETEKIADTDVERAIQRTLDELEWKLHSHVLEGSERQRLEYEESDRIF. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04200 272 Coils Coil 137 157 - -
Seca8g04200 272 SMART finulus 104 153 IPR011598 GO:0046983
Seca8g04200 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 163 IPR036638 GO:0046983
Seca8g04200 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 147 IPR011598 GO:0046983
Seca8g04200 272 Gene3D - 96 172 IPR036638 GO:0046983
Seca8g04200 272 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 245 IPR044658 -
Seca8g04200 272 Pfam Helix-loop-helix DNA-binding domain 102 148 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04200 Seca-Chr8 119485346 119486770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04200 1 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 35.470 1.11e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04200 - - gmx:100815874 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04200 8 119485346 119486770 Seca8g04200 8 119485346 119486770 ECH