Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04189 ATGGCTTCATCTCTGTTGTTTACAGTGAGGAGGCGTGAGCCGGTGCTTGTAGCTCCTGCGAAACCCACCCCTCGTGAAGTGAAACTACTCTCAGAGATAGATGACCAAGAAGGCCTGCGTTTCCAAATTCCAGTGATACAGTTCTATCGCTATGATCCCTCAATGGCAGGGAAAGACCCTGTTGAGGTCATAAGAAAGGCACTGGCCAAGACACTTGTGTTTTACTATCCTTTTGCAGGTAGACTCAGGGAAGGGGCTGGTCGGAAACTGATGGTGGATTGTACTGGGGAGGGTGTTTTGTTCATTGAGGCAGATGCTGATGTCACGCTCAACCAATTTGGTGATGCTCTTCAACCTCCCTTCCCATGCTGGGAGGAGCTCCTTTACGATGTTCCTGCTTCTCAAGGAGTCCTTAACACTCCCTTGCTGGTTATACAGGTAACACGGCTCAAGTGCGGTGGTTTCATTTTTGCTCTGCGGTTGAACCACACCATGAGCGATGCGGCTGGTTTGGTCCTATTCATGAGTGCCTTGGGTGAAATGGCTCGCGGGATGCACCAACCTTCAATCCGACCAGTTTGGCGCAGAGAGCTTCTAAATGCAAGGGACCCACCAAGAGTGACATGTACCCATCGTGAATACGAACAAGTACCAGATACCAAAGGAACCATCATCCCCTTAGACGACATGGCCCATCGCTCTTTCTTCTTTGGTCCCAAAGAGGTATCCGCAATTCGTGGCCTCCTTCCTCCCCACCTTCGTCAATGCTCCAATTTCGAAATTCTCACTGCATGCCTCTGGCGTTGCCGCACAATAGCTTTGCAACCAGAGAGTGATGAGGAGGTTCGCATAATTTGCATTGTTAACGCACGCGCCAAGTTTGACCCTCCATTACCGTCTGGTTACTATGGCAACGCTTTTGCATTTCCCGTTGCGGTTACAACTGCAGGGAAGCTGTTTGAAAATCCGTTGGGATATGCGTTGGAGTTAGTGAGGAAAGCAAAAGCTGACGTGACTCAAGAGTACATGCATTCGTTGGCAGATCTAATGGTCACCAATGGACGACCTCATTTTACTGTGGTAAGGTCCTACCTTGTGTCCGATGTGACACGTGCTGGGTTCGGAGAGGTTGATTTTGGGTGGGGGAAGCCTGTTTATGGAGGACCTGCCAAAGGAGGAGTTGGAGCCATACCTGGTGTGGCAAGCTTTTATATACCTTTTAAAAATGCTAAAGGAGAGGAAGGTTTAGTCATACCGGTTTGTTTACCATCAGATGCCATGGAGAGGTTCGTAAAAGAGTTGGATAACATGCTTAACAACCATGTCCAACTTGCTAAGCGTGGTTTTATCGTTTCTTCGTTGTAG 1365 0.4879 MASSLLFTVRRREPVLVAPAKPTPREVKLLSEIDDQEGLRFQIPVIQFYRYDPSMAGKDPVEVIRKALAKTLVFYYPFAGRLREGAGRKLMVDCTGEGVLFIEADADVTLNQFGDALQPPFPCWEELLYDVPASQGVLNTPLLVIQVTRLKCGGFIFALRLNHTMSDAAGLVLFMSALGEMARGMHQPSIRPVWRRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDDMAHRSFFFGPKEVSAIRGLLPPHLRQCSNFEILTACLWRCRTIALQPESDEEVRIICIVNARAKFDPPLPSGYYGNAFAFPVAVTTAGKLFENPLGYALELVRKAKADVTQEYMHSLADLMVTNGRPHFTVVRSYLVSDVTRAGFGEVDFGWGKPVYGGPAKGGVGAIPGVASFYIPFKNAKGEEGLVIPVCLPSDAMERFVKELDNMLNNHVQLAKRGFIVSSL. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04189 454 Gene3D - 5 214 IPR023213 -
Seca8g04189 454 Pfam Transferase family 12 435 - -
Seca8g04189 454 PANTHER ACYL TRANSFERASE 4 7 438 - -
Seca8g04189 454 Gene3D - 215 434 IPR023213 -
Seca8g04189 454 Coils Coil 427 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04189 Seca-Chr8 119370381 119374848 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04189 9 434 Monolignol Biosynthesis Gene Families AT5G48930 30.180 4.53e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04189 K19861 - gmx:100797017 802.742