Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04186 ATGGCTCCATCTCTGTTGTTTACAGTGCGGAGGCGTGAGCCGGTTCTTGTAGCTCCTGCGAAACCCACCCCTCATGAAATGAAACTACTCTCAGACATAGATGACCAAAAAGGCCTGCGTTTCCAAATTCCAGGGATACAGTTCTATCGCTATGATCCCTCAATGGCAGGGAAAGACCCTGTTGAGGTCATAAGAAAGGCACTGGCCAACACACTTGTGTTTTATTATCCTTTTGCAGGTAGACTCAGGGAAAGGGCTAGTCGGAAACTGATGGTAGATTGTACTGGGGAGGGTGTTTTGTTCATTGAGGCAGATGCTGATGTCACGCTTAACCAATTTGGTGATGCTCTTCAACCTCCCTTCTCATACTTGGAGGAGCTCCTTTACAATGTTCCTGGTTCTGAAGGAATCCTTAACACTCCCTTGCTCCTCATTCAGGTAACACGCCTGAAGTGCGGTGGTTTCATTTATACTCAGCGGGTGAACCACACCATGAGCGATGCAGCTGGTTTGAGCCTATTCATGACGGCCTTAAGCGAAATTGCTCGCGAGATGCACGAACCTTCAATCCCACCAGTTTGGCGTAGAGAACTTCTAAATGCAAGGGACCCACCAAGAGTGACATGTACCCATCGTGAATACGAACAAGTACCAGATACCAAAGGAACCATCATCCCCTTAGACGACATGGCCCATCGCTCTTTCTTCTTTGGTCCCAAAGAGGTATCCGCAATTCGTGGCCTCCTTCCTCTCCACCTTCGCCAATGCTCCAATTTTGAAATTCTCACTGCATGCCTCTGGCGTTGCCGCACAATAGCTTTGCAGCACGACAGTGACGAGGAGGTTCGCTTAATTTGCGTTGTTAATGCACGCGCCAAATTTGACCCTCCATTACCGTCCGGTTACTATGGCAATGCTTTTGCATTGCCCGTTGCGGTCACAACTGCAGGGAAGCTGTGTGAAAATCAATTGGGATATGTGCTGGAGTTAGTGAGGAAAGCAAAAGCTGATGTGACTGAAGAGTACATGCATTCGATGGCAGATCTTATGGTCACCAAGGGACGACCTCATTTTACTGTGAGAAGGTCCTACCTTCTGACAGATGTAACTCGCGCCGGGTTCGGAGAGGTTGATTTTGGGTGGGGAAAGCCTGTTTATGGAGGACCTGCAGACGAAGGAGGAATACCTGGTTTGGCAAGCTATTATTTACGTTCTAAAAATGCTAAAGGAGAGGAAGGTATAGTCATACCGGTTTGTTTACTATCAGATGCCATGGAGAGGTTCATAAAAGAGTTGGATGACATTCTTAACAACCATGTCCAACCTGCTAAGGGTGGTTTTATCGTTTCTTCATTGTAG 1359 0.4746 MAPSLLFTVRRREPVLVAPAKPTPHEMKLLSDIDDQKGLRFQIPGIQFYRYDPSMAGKDPVEVIRKALANTLVFYYPFAGRLRERASRKLMVDCTGEGVLFIEADADVTLNQFGDALQPPFSYLEELLYNVPGSEGILNTPLLLIQVTRLKCGGFIYTQRVNHTMSDAAGLSLFMTALSEIAREMHEPSIPPVWRRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDDMAHRSFFFGPKEVSAIRGLLPLHLRQCSNFEILTACLWRCRTIALQHDSDEEVRLICVVNARAKFDPPLPSGYYGNAFALPVAVTTAGKLCENQLGYVLELVRKAKADVTEEYMHSMADLMVTKGRPHFTVRRSYLLTDVTRAGFGEVDFGWGKPVYGGPADEGGIPGLASYYLRSKNAKGEEGIVIPVCLLSDAMERFIKELDDILNNHVQPAKGGFIVSSL. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04186 452 Gene3D - 215 431 IPR023213 -
Seca8g04186 452 Gene3D - 5 214 IPR023213 -
Seca8g04186 452 Pfam Transferase family 12 432 - -
Seca8g04186 452 PANTHER ACYL TRANSFERASE 4 7 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04186 Seca-Chr8 119229086 119232263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04186 9 435 Monolignol Biosynthesis Gene Families AT5G48930 31.556 1.28e-51 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04186 K19861 - gmx:100797017 734.947