Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04185 ATGGAAACAGCGGCCACTTGCCTCTTCTGCGGTAGAATCCCTGCAAAAGGGAAATTGGGTGTTGCAAGTGAGCTTTTTTTCCGTAGTAATGCCTCTTTTGTGCCCTTTTCTTCATTTGGATCATTTTGTCTATTAACACGTAACAATAATGTCAATACTATGTCCATGCCCATGTGCTCTGTGTCCTCTTCAATTGGAACCCATCGCCTCATTCGAAACGCCACTAATAGCAGTGAAATTAAGCTTCCCAGTTATGCCAAAAGAAGAAGGAGAAGAAGAAGTCGGTTTAATGAAACTGGGTCTTCTTCTTCTTCTCCTCAGCTACCCAGTGAGAACAACGTGGGTGGTGGTAGTGATATAGGTATTAATCAGAATGGAGACCCAGTTGGACGGAAAGAGCTTGGAAAGAGTGTGGTGAGGTGGATTCGTGATGGCATGAGAGCTATGGCTTCTGATATTGCTTCAGCAGAATTACAAGGAGAGTTGGAGTTCTCAGAGCTGAGGCAGCGCATGGGACCTGGTCTCACTTTTGTTATTCAGGCTCAGCCATATCTGAACGCTGTTCCTATGCCTCTTGGCCTTGAAGTTATTTGCTTGAAGACCTGCACCCACTATCCCACTCTGTTTGATCATTTTCAGAGGGAGCTACGTGATGTTCTTCAAGACCTGCAGGGTAAATCCTTGGTTCAGGATTGGCGTGATACTCAGTCCTGGAAACTGCTTAAGGAGCTCGCCAATTCAGCTCAGCATAGGGCAGTTGCAAGAAAGATAACCCAGCCCAAGACTGTCCAAGGCGTTTTAGGAATGGACATAGGAAAGGTCAAAGCAATACAGCAAAGGATTGATGAATTCACCAACAGCATGTCAGAACTTCTCCGTATTGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTGGATGCTGTTCCTAAACCAAATGATACTTCTGATTCATCAAAACCGATCGAGTTCTTGGTTAGCCATAGCCAGCCTCAACAAGAACTCTGTGACACCATCTGTAATTTAAATGCCATCAGTACTTCTACAGGATTGGGGGGAATGCATTTGGTGATATTCAAGGTTGAAGGGAACCACCGGTTGCCACCTACTACTCTTTCTCCTGGAGACATGGTTTGTGTGAGAACATGTGACAGTAGGGGTGCAGTTACAACTTCTTGCATGCAAGGATTTGTGAACAATCTTGGGGATGATGGCTATAGTATTACTGTTGCTTTAGAGTCACGTCATGGTGATTCTACATTCTCCAAACTATTTGGGAAGAATGTGCGCATTGACCGTATTCAAGGACTGGCAGATACGCTCACATATGAGCGTAACTGTGAAGCCCTAATGCTGCTTCAGAAGAATGGTTTACGAAAGAAGAATCCTTCAATTTCTGTTGTTGCTACCCTGTTTGGAGATGGGGAAGATGTTGCATGGCTTGAAAAGAATGATTTGGCTGACTGGACAGAAGAAAAACTGAATGGAAAGTTAGGAGGTGAAACCTTTGATAATTCTCAGCAGAGAGCAATTGCTCTGGGTTTGAATAAGAAGAGGCCTGTGTTGGTTATCCAAGGGCCTCCTGGTACAGGCAAGACTGGTTTGCTCAAGCAAATTATAGCATGTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAATGTTGGATTAAACATTGTACGGGTGGGAAATCCAGCTCGTATATCAAAAACAGTGGGATCAAAGTCCTTGGGAGAAATTGTAAATACAAAGCTTGCTGGTTATCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGGAAAGATCTAAGACATTGTTTAAGGGATGATTCATTAGCTGCAGGCATACGCCAACTTCTGAAACAGCTGAGCAGGTCGCTGAAGAAAAAGGAAAAGCAGACTATAAATGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACCAATACTGGAGCAGCTGATCCTTTGATTCGAAGGCTAGGTACTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTACAGGGAAAGCGCTGTATTCTTGCCGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAAGGTGGTCTAGGAATATCTCTGCTGGAGAGAGCTTCAACTTTGCATGAAGGGATCCTTACTACCACATTAACAACACAATACCGTATGAACAATGCAATTGCTAGTTGGGCTTCAAAGGAGATGTACGGGGGATTGTTGAAGTCCTCTGAGACTGTCTTTTCTCATCTTCTTGTAGACACTCCTTTTGTTAAGCCTACATGGATAACACAGTGCCCACTGCTATTGCTTGATACAAGAATGCCATATGGAAGTCTGTCAGTTGGTTGTGGAGAGCATCTAGACCCAGCTGGAACAGGATCATTTTATAACGAAGGAGAAGCTGACATAGTTTTGCAGCATGTCTTTTCCTTAATTTATGCTGGTAATTACGTTTAA 2550 0.4353 METAATCLFCGRIPAKGKLGVASELFFRSNASFVPFSSFGSFCLLTRNNNVNTMSMPMCSVSSSIGTHRLIRNATNSSEIKLPSYAKRRRRRRSRFNETGSSSSSPQLPSENNVGGGSDIGINQNGDPVGRKELGKSVVRWIRDGMRAMASDIASAELQGELEFSELRQRMGPGLTFVIQAQPYLNAVPMPLGLEVICLKTCTHYPTLFDHFQRELRDVLQDLQGKSLVQDWRDTQSWKLLKELANSAQHRAVARKITQPKTVQGVLGMDIGKVKAIQQRIDEFTNSMSELLRIERDAELEFTQEELDAVPKPNDTSDSSKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVIFKVEGNHRLPPTTLSPGDMVCVRTCDSRGAVTTSCMQGFVNNLGDDGYSITVALESRHGDSTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNDLADWTEEKLNGKLGGETFDNSQQRAIALGLNKKRPVLVIQGPPGTGKTGLLKQIIACAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKTVGSKSLGEIVNTKLAGYREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLSRSLKKKEKQTINEVLSSAQVVLATNTGAADPLIRRLGTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERASTLHEGILTTTLTTQYRMNNAIASWASKEMYGGLLKSSETVFSHLLVDTPFVKPTWITQCPLLLLDTRMPYGSLSVGCGEHLDPAGTGSFYNEGEADIVLQHVFSLIYAGNYV. 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04185 849 Pfam AAA domain 730 845 IPR041679 -
Seca8g04185 849 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 158 846 - -
Seca8g04185 849 FunFam DNA-binding protein SMUBP-2 isoform X2 307 438 - -
Seca8g04185 849 CDD DEXXQc_SMUBP2 504 753 - -
Seca8g04185 849 MobiDBLite consensus disorder prediction 98 120 - -
Seca8g04185 849 Coils Coil 629 649 - -
Seca8g04185 849 Gene3D - 752 848 IPR027417 -
Seca8g04185 849 MobiDBLite consensus disorder prediction 81 131 - -
Seca8g04185 849 Gene3D - 307 438 - -
Seca8g04185 849 Coils Coil 605 625 - -
Seca8g04185 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 788 IPR027417 -
Seca8g04185 849 SMART ultradead3 500 752 IPR014001 -
Seca8g04185 849 Gene3D - 289 736 IPR027417 -
Seca8g04185 849 SMART AAA_5 519 734 IPR003593 GO:0016887
Seca8g04185 849 Pfam AAA domain 504 720 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04185 Seca-Chr8 119123294 119130572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04185 490 693 Core DNA Replication Machinery Family AT1G08840 25.728 1.47e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04185 - - aip:107625008 1321.22