LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g04175	ATGGTTTCGCTGCATCCACTAGTGTGTCCACCTTTCTCAGTTTCTTCTTCCTCCTCCTCCTCCTCCTCCTTCATTAGCGGCGATCTTCAGTTTCGCATTAGCTTTCCCCCAAAACTGAAAATCAGCTTCACTTCAAAACATCCTTCTTTCTCCTGCAATGCTTCATGGCAAGAGCTTGCGGGAGTTTTAGTATTCTCAGCGATTCCTTTCACCGCCGTGAAAGCTATAGCTAATAGTCCTCTAGGAGAATCGCTTCAGAGGAAAATGGAGGAGAGAAAGAAATTCGCTGTAGAAAACTCCTCCAAATTCAAGGCTGCAGCCGAGAAGGCCAGAAAGGAGAGCTTTTGGTATGGTGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGGCTACCCATCATATCTTACTGGGGAATTACCTGGGGATTATGCCTTTGACATTGCTGGGCTTGGAAAGGATCCTGTGGCACTGCAGAAATACTTCAACTTTGAGATATTGCATGCTCGGTGGGCTATGCTAGCATCCGTGGGTGCTCTAATTCCTGAATTGTTAGACCTAATGGGAGCCGTTCACTTTGTAGAACCTGTCTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTCTAGATTACCTCGGCATCCCAGGTCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTTGGACCAGAATACGCTAGATACTGTGGGATTGAGGCATTGGAGCCTCTTGGAATATATCTTCCTGGTGATATAAATTATCCTGGAGGAGTATTGTTTGATCCCTTAAATTTGTCCAAAGATCCTGAAGCTTTTGAAGATCTGAAGGTGAAAGAAATAAAAAATGGACGCTTAGCAATGATTGCCTGGTTAGGCTTTTACATACAAGCAGCTCTGACGGGTAAAGGTCCTGTGCAGAATCTCCTGGATCACATCTCTGATCCTTTCCACAACAACTTGCTGGGCTCACTGCCTCACTAA	1014	0.4566	MVSLHPLVCPPFSVSSSSSSSSSFISGDLQFRISFPPKLKISFTSKHPSFSCNASWQELAGVLVFSAIPFTAVKAIANSPLGESLQRKMEERKKFAVENSSKFKAAAEKARKESFWYGEDRPRWLGPISYGYPSYLTGELPGDYAFDIAGLGKDPVALQKYFNFEILHARWAMLASVGALIPELLDLMGAVHFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDPEAFEDLKVKEIKNGRLAMIAWLGFYIQAALTGKGPVQNLLDHISDPFHNNLLGSLPH.	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g04175	337	FunFam	Chlorophyll a-b binding protein, chloroplastic	123	335	-	-
	Seca8g04175	337	Pfam	Chlorophyll A-B binding protein	133	308	IPR022796	-
	Seca8g04175	337	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	88	331	IPR001344	GO:0009765\|GO:0016020
	Seca8g04175	337	Gene3D	Chlorophyll a/b binding protein domain	123	334	-	-
	Seca8g04175	337	SUPERFAMILY	Chlorophyll a-b binding protein	115	334	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g04175	Seca-Chr8	118943407	118947934	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g04175	37	335	Chloroplast and Mitochondria Gene Families	AT1G76570	77.926	7.07e-178	494

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g04175	K14172		-	gmx:100786260	542.732