Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04174 ATGGAGAAGACAGGAGTGGTAGTGTTATCGGCGAAAGAGGCATTCGAGAAGCTTGAGAAGGTTGGAGAAGGGACATATGGGAAGGTGTACAGGGCAAGAGAAAAGGCAACTGGGAAGATCGTTGCTCTCAAGAAGACTCGCCTCCATGAGGACGAAGAAGGTGTCCCTCCCACCACTCTTCGTGAAGTTTCCATTCTGCGAATGCTCTCCCGCGATCCCCATGTCGTCAAGTTAATGGATGTGAAACAGGGTCAGAACAAGGAAGGGAAGACGGTGCTCTACTTGGTCTTTGAGTACATGGATACTGATCTCAAGAAATACATTCGCAGTTTCCGTCAAACCGGAGAAAACATTCCACCCAAAACTGTCAAAAGCTTGATGTACCAACTTTGCAAGGGTGTTGCTTTCTGCCACGGCCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGAAAAACAATGATGCTTAAAATAGCTGATCTTGGACTTGCTCGAGCATTTACTGTGCCAATTAAGGAGTACACACATGAGATACTAACCCTGTGGTATAGAGCTCCTGAAGTCCTTATGGGAGCGACCCATTACTCAATGGCAGTGGATATGTGGTCTGTTGCCTGCATATTTGCTGAACTTGTCACCAAGCAAGCACTCTTTCCTGGTGATTCTGAGCTGCAACAACTCCTTCATATATTCAGGCTGTTGGGCACTCCTAATGAAGAGGTGTGGCCAGGCGTTAGTAAACTAATGAATTGGCATGAATACCCCCAGTGGAGACCTCAGAGTCTGTCAACTGCTGTACCAACTTTGGATGAGCTTGGACTTGATCTACTATCTCAAATGTTGCAATATGAACCTTCCAAGCGGATTTCTGCGAAGAAAGCTATGGAACACCCTTTGATGACCTGGACAAGACCTATCTTTAGAAATTTCATGGTTACTTATGCTTCTCTCGAGCACATATCAAAATTTGTTTTAGGATGA 996 0.4568 MEKTGVVVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVVKLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIRSFRQTGENIPPKTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKEYTHEILTLWYRAPEVLMGATHYSMAVDMWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWRPQSLSTAVPTLDELGLDLLSQMLQYEPSKRISAKKAMEHPLMTWTRPIFRNFMVTYASLEHISKFVLG. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04174 331 ProSiteProfiles Protein kinase domain profile. 15 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04174 331 FunFam Cyclin-dependent kinase B2,2 11 101 - -
Seca8g04174 331 PIRSF ILK 6 288 - -
Seca8g04174 331 SUPERFAMILY Protein kinase-like (PK-like) 11 306 IPR011009 -
Seca8g04174 331 Gene3D Phosphorylase Kinase; domain 1 10 101 - -
Seca8g04174 331 SMART serkin_6 15 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04174 331 Gene3D Transferase(Phosphotransferase) domain 1 102 315 - -
Seca8g04174 331 PANTHER CELL DIVISION PROTEIN KINASE 13 305 - -
Seca8g04174 331 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Seca8g04174 331 Pfam Protein kinase domain 15 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04174 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Seca8g04174 331 FunFam Cyclin-dependent kinase 2 103 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04174 Seca-Chr8 118911514 118913760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04174 1 303 Core Cell Cycle Gene Families AT1G20930 85.855 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca8g04174 Pkinase 4.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04174 K07760 - gmx:100808302 581.637