Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04173 ATGCGTCTTGGGACCCCTTCCTCCCTCTCCCGTATTTTATTCCCCACGTCAAGGACGGAAAGTACTGCTTCTGCTGCGGGTTCTATTCCCCACCCAAGTAGCACACGATTTATTGCTTATGAAGAACTTAAAGAAGCAGCAAACAATTTTGAACCAGCGAGTGTACTTGGAGAAGGAGGGTTTGGTAGAGTTTTTAAAGGTATCTTAAATGATGGTACTTCTGTAGCAATTAAGAGGCTTACAAGTGGAGGGCAACAAGGTGACAAAGAGTTTCTGGTTGAGGTTGAAATGCTTAGCCGATTGCATCACCGTAACCTTGTAAAACTGGTGGGATACTATAGTAGTCATGACTTATCACAAAATCTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAAGCTTGGCTTCATGGTCCCTTGGGAATAAATTGTCCTTTGGATTGGGACACCAGAATAAAAATTGCTCTTGATGCTGCAAGAGGACTTTCATACCTGCATGAAGACTCACAGCCCTGTGTATTATACAGAGATTTCAAGGCATCCAACATATTGCTTGAGAACAATTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAGGCACCTGAAGGCAGATCTAATTATTTGTCTACTTGTGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCCATGACCGGGCACCTACTTGTTAAAAGTGATGTTTATAGCTATGGGGTTGTCTTGCAAGAACTACTTACTGGAAGGAAATATGTCACAGCCAAGTGCACAAGAGAACCTTGTTACTTGGTTTATTATTCCTTTCAGGCTAGGCCAATCCTGAGAGACAAGGATCGGCTGGAAGAGATTGTTGATCCCAAACTTGGGGGAAAGTATCCAAAGGAAGATTTTGTTCGTGTGTGCACTATTGTTGCAGCTTGTGTTGCTCCTGAAGCAAGCCAACGACCCACAATGGGTGAAGTGTCCTCTAGCACTTTTGAGTTTGACGGAACATCTTCAATGTTCTCCTCATGTCCTTACTCTGGTCTAAGTGCCGCCTTTGACAATGAGAACATTTCTAGGACGGTGGTTTTCTCTGAAGATCTTCATGAAGGACGATGA 1110 0.4342 MRLGTPSSLSRILFPTSRTESTASAAGSIPHPSSTRFIAYEELKEAANNFEPASVLGEGGFGRVFKGILNDGTSVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSSHDLSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRIKIALDAARGLSYLHEDSQPCVLYRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTCVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLQELLTGRKYVTAKCTREPCYLVYYSFQARPILRDKDRLEEIVDPKLGGKYPKEDFVRVCTIVAACVAPEASQRPTMGEVSSSTFEFDGTSSMFSSCPYSGLSAAFDNENISRTVVFSEDLHEGR. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04173 369 FunFam Receptor-like serine/threonine-protein kinase ALE2 128 340 - -
Seca8g04173 369 PANTHER OS01G0750732 PROTEIN 23 326 - -
Seca8g04173 369 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
Seca8g04173 369 Gene3D Transferase(Phosphotransferase) domain 1 128 337 - -
Seca8g04173 369 ProSiteProfiles Protein kinase domain profile. 50 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04173 369 Pfam Protein kinase domain 53 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04173 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Seca8g04173 369 SUPERFAMILY Protein kinase-like (PK-like) 27 327 IPR011009 -
Seca8g04173 369 FunFam Receptor-like serine/threonine-protein kinase ALE2 30 127 - -
Seca8g04173 369 Gene3D Phosphorylase Kinase; domain 1 15 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04173 Seca-Chr8 118905833 118907371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04173 18 369 Receptor kinase-like Gene Family AT4G02010 73.298 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca8g04173 Pkinase 5.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04173 - - gmx:100793528 588.571