Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g04160 | ATGAAGGGTGGCAAATCTAAACCCGAATCTAAGAAAGCCGATGCCAAACTTGCTGTGAATAAGAAGAAAGGTGGCACAGTCACCAAGCCGGCCAAGAAGGGGAAGGCCGCCAAAGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAAGACCATCCTAACAACAAAGCAGTCTCTGCTGTTGGCAAAGCTGCTGGAGCCAAATGGAAATCCATGTCTGATGCTTTTCAGGAGAAAGCACCATATGTGGCAAAGTCAGAGAAACGAAAGGTAGAGTATGAGAAGAATATGAGAGCCTACAACAGCAGACAGGCTGAAGGTCCTACTGCTGCGGATGAAGAATCTGAGAAGTCAATGTCAGAAGTGAATGATGAGGATGAAGATGATGAGGGGAGTGACGAGGAGGAGGAGGACGATGAGTAG | 462 | 0.4762 | MKGGKSKPESKKADAKLAVNKKKGGTVTKPAKKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKDHPNNKAVSAVGKAAGAKWKSMSDAFQEKAPYVAKSEKRKVEYEKNMRAYNSRQAEGPTAADEESEKSMSEVNDEDEDDEGSDEEEEDDE. | 154 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g04160 | 153 | CDD | HMG-box_AtHMGB1-like | 44 | 106 | - | - | |
Seca8g04160 | 153 | MobiDBLite | consensus disorder prediction | 131 | 153 | - | - | |
Seca8g04160 | 153 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Seca8g04160 | 153 | Pfam | HMG (high mobility group) box | 43 | 114 | IPR009071 | - | |
Seca8g04160 | 153 | Coils | Coil | 96 | 116 | - | - | |
Seca8g04160 | 153 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 4-RELATED | 1 | 148 | IPR031061 | - | |
Seca8g04160 | 153 | Gene3D | High mobility group box domain | 27 | 130 | IPR036910 | - | |
Seca8g04160 | 153 | MobiDBLite | consensus disorder prediction | 106 | 153 | - | - | |
Seca8g04160 | 153 | SUPERFAMILY | HMG-box | 30 | 124 | IPR036910 | - | |
Seca8g04160 | 153 | SMART | hmgende2 | 42 | 115 | IPR009071 | - | |
Seca8g04160 | 153 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 43 | 114 | IPR009071 | - | |
Seca8g04160 | 153 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g04160 | Seca-Chr8 | 118655282 | 118657881 | Dispersed/Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Seca8g04160 | HMG_box | 2.2e-20 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g04160 | K25507 | - | gmx:100500173 | 195.282 |