Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04158 ATGAAGGGTGGCAAATCTAAAGCCGAATCTAAGAAAGCCGATGCCAAACTTGCTGTGAATACGAAGAAAGGGGGCGCAGTCACCAAGCCGGCCAAGAAGGGGAAGGCCGCCAAAGACCCTAACAAGCCTAAGAGGCCTGCCAGTGCCTTCTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAAGAACATCCTAACAACAAAGCTGTCTCTGCTGTTGGCAAAGCTGCTGGAGCCAAATGGAAATCCATGTCTGATGCTGTATGTAAGAAAGCACCATATGTGGCAAAGGCAGAGAAGCGAAAGGTTGAGTATGAGAAGAATATGAGAGCCTATAACAACAAACAGGCTGAAGGTCCTACTGCTGCGGATGAAGAATCTGAGAAGTCTTCAGAGGTGAACGATGAGGATGAAGGAGATGATGAGGGCAGTGACGAGGAGGAGGATGACGATGAGTAG 462 0.4827 MKGGKSKAESKKADAKLAVNTKKGGAVTKPAKKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKEHPNNKAVSAVGKAAGAKWKSMSDAVCKKAPYVAKAEKRKVEYEKNMRAYNNKQAEGPTAADEESEKSSEVNDEDEGDDEGSDEEEDDDE. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04158 153 CDD HMG-box_AtHMGB1-like 44 106 - -
Seca8g04158 153 SMART hmgende2 42 115 IPR009071 -
Seca8g04158 153 SUPERFAMILY HMG-box 30 123 IPR036910 -
Seca8g04158 153 MobiDBLite consensus disorder prediction 1 45 - -
Seca8g04158 153 Coils Coil 96 116 - -
Seca8g04158 153 MobiDBLite consensus disorder prediction 1 18 - -
Seca8g04158 153 MobiDBLite consensus disorder prediction 100 153 - -
Seca8g04158 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 148 IPR031061 -
Seca8g04158 153 Pfam HMG (high mobility group) box 43 114 IPR009071 -
Seca8g04158 153 MobiDBLite consensus disorder prediction 130 153 - -
Seca8g04158 153 Gene3D High mobility group box domain 27 130 IPR036910 -
Seca8g04158 153 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 114 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04158 Seca-Chr8 118583492 118585371 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca8g04158 HMG_box 2.6e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04158 K25507 - gmx:100500173 176.407